AT1G18470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.956 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane Fragile-X-F-associated protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane Fragile-X-F-associated protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane Fragile-X-F-associated protein (InterPro:IPR019396), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 2617 Blast hits to 2612 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 1517; Fungi - 24; Plants - 500; Viruses - 234; Other Eukaryotes - 342 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6356407..6360057 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53003.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.98 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.26 | ||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSCRRVLKSI QALAAHSLLF CFTLLLVLKL DHTVSSSWWM VFFPLWAFHA VVARGRFSLP APVAPRNRHW APCHAVVATP LLVAFELLLC IYLESSYARW 101: PPAVSLKIAF LPLLAFELTI LVDNLRMCRA LMPGDDDSIT DDAIWEALPH FWVAISMVFT LAATFFTLLK LSGDVVALGW WDLFINFGIA ECFAFLVCTK 201: WSNPVIHRSS RARETGSSST SIRYLDWNSG LVVAPEEDRH QDRWCGLQDI GGHMLKIPVI LFQVVLCMYL EGTPERAKDI SIPVLFSPLF LLQGLGVLFA 301: ASKLLEKIVL LLRGEAGPGL YFRFSSSAHD CLGFLHHGSR LLGWWSIDEG SREEQARLYF DQESGYNTFS GHPPEIVKKM PKEDLAEEVW RLQAALGEQT 401: EITKFSQQEY ERLQNEKVLC RVCFEKDISL VLLPCRHRVL CRTCADKCTT CPICRIDIEK RLSVYDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)