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AT1G18360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1); Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38; Bacteria - 4736; Metazoa - 147; Fungi - 149; Plants - 444; Viruses - 63; Other Eukaryotes - 879 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G18360-MONOMEReggNOG:COG2267eggNOG:KOG1455EMBL:AY070740EMBL:AY093741EMBL:CP002684EnsemblPlants:AT1G18360
EnsemblPlants:AT1G18360.1entrez:838417ESTHER:arath-At1g18360Gene3D:3.40.50.1820GeneID:838417GO:GO:0016787Gramene:AT1G18360.1
gramene_pathway:4.3.1.18gramene_pathway:PWY-6196hmmpanther:PTHR11614hmmpanther:PTHR11614:SF96HOGENOM:HOG000003227InterPro:IPR022742InterPro:IPR029058
KEGG:ath:AT1G18360MEROPS:S33.A17OMA:VADYENDPfam:PF12146PhylomeDB:Q8VYJ0Proteomes:UP000006548Reactome:R-ATH-1482883
Reactome:R-ATH-426048RefSeq:NP_173272.2STRING:3702.AT1G18360.1SUPFAM:SSF53474TAIR:AT1G18360UniGene:At.28338UniProt:Q8VYJ0
Coordinates (TAIR10) chr1:-:6316996..6319204
Molecular Weight (calculated) 41962.00 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.07
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MICSSKGTVV IATRSSFPRL LNRIQNRNDV PISVIATRRS SMSVEAFPMR LKSSQKKRKM NIGCGVSPSS PTTTVVDEEV AIRRKLAMRR VLEDNGGDGS
101: SVRDFSLFTT KRGDTLFTQS WTPVDSAKNR GLVVLLHGLN EHSGRYSDFA KQLNVNGFKV YGIDWIGHGG SDGLHAYVPS LDYAVADLKS FIEKVIAENP
201: GLPCFCIGHS TGGAIILKAM LDAKIEARVS GIVLTSPAVG VQPTYPIFGV IAPFLSFLIP RYQLSAAKKK IMPVSRDPEA LLAKYSDPLV YTGFIRARTG
301: NEILRLGAHL LQNLNRIKVP FLVMHGTADT VTDPKGTQKL YNEASSSDKS IKLYDGLLHD LLFEPERETI AGVILDWLNR RV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)