AT1G18270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.900 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ketose-bisphosphate aldolase class-II family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264; Bacteria - 21742; Metazoa - 568; Fungi - 820; Plants - 423; Viruses - 1; Other Eukaryotes - 10228 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6283634..6293772 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147051.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1373 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSGVVGFVGL DSFSFELASS LLRSGFKVQA FEISTELVEK FIELGGHKCD SPADVGKAAA AVVVVLSHPD QIQDVIFGDE GVMKGLQKDA VLLLSSTIST 0101: LQLQKLEKQL TEKREQIFVV DAYVLKGMSE LLDGKLMIIA SGRSDSITRA QPYLTAMCQN LYTFEGEIGA GSKVKMVNEL LEGIHLVAAV EAISLGSQAG 0201: VHPWILYDII SNAAGNSWIY KNHIPLLLKD DIEGRFLDVL SQNLAIVEDK AKSLPFPVPL LAVARQQLIS GISQMQGDDT ATSLAKISEK VLGVGILEAA 0301: NRELYKPEDL AKEITTQAKP VNRIGFIGLG AMGFGMAAHL LKSNFSVCGY DVYKPTLVRF ENAGGLAANS PAEVTKDVDV LVIMVTNEVQ AEDVLYGHLG 0401: AVEAIPSGAT VVLASTVSPA FVSQLERRLE NEGKDLKLVD APVSGGVKRA AMGELTIMAS GTDEALKSAG LVLSALSEKL YVIKGGCGAG SGVKMVNQLL 0501: AGVHIASAAE AMAFGARLGL NTRKLFNVIS NSGGTSWMFE NRVPHMLDND YTPYSALDIF VKDLGIVTRE GSSRKVPLHI STVAHQLFLA GSAAGWGRID 0601: DAGVVKVYET LAGIKVEGRL PVLKKQDLLK SLPAEWPSDP TTDIHRLNMG NSKTLVVLDD DPTGTQTVHD VEVLTEWSVE SISEQFRKKP ACFFILTNSR 0701: SLSPEKASEL IKDICSNLCA ASKEVGNADY TIVLRGDSTL RGHFPQEADA AVSILGEMDA WIICPFFLQG GRYTIDDVHY VADSDRLVPA GETEFAKDAS 0801: FGYKSSNLRE WVEEKTAGVI PANSVQSISI QLLRKGGPDA VCEFLCSLKK GSTCIVNAAS ERDMAVFAAG MIQAELKGRS FLCRTAASFV SALIGIIPKD 0901: PVLPKDFESN KESSGALIVV GSYVPKTTKQ VEELQSQHNQ NLRSIEISVE KVALKSSEVR DEEIRRAVEM ADAFLRAGRE TLIMSSRELI TGKTSSESLD 1001: INSKVSSALV EVVSQISTRP RYILAKGGIT SSDTATKALK ARRALVIGQA LAGVPVWKLG PESRHPGVPY IVFPGNVGNS TALAEVVKSW SVVAGRSTKE 1101: LLLNAEKGGY AVGAFNVYNL EGIEAVVAAA EEENSPAILQ VHPGAFKQGG IPLVSCCISA AEQARVPISV HFDHGTTKHE LLEALELGLD SVMVDGSHLS 1201: FTENLSYTKS ITELARSKNI MVEAELGRLS GTEDGLTVED YEAKLTNVNQ AQEFMETGID ALAVCIGNVH GKYPKSGPNL KLDLLKELHA LSSKKGVFLV 1301: LHGASGLSEN LIKECIENGV RKFNVNTEVR TAYMEALSSG KKTDIVDVMS ATKAAMKAVI ADKIRLFGSA GKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)