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AT1G18260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HCP-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink).
Protein Annotations
BioGrid:23645DIP:DIP-59592NeggNOG:COG0790eggNOG:KOG1550
EMBL:AB189471EMBL:AC069551EMBL:AY039982EMBL:CP002684
EnsemblPlants:AT1G18260EnsemblPlants:AT1G18260.1entrez:838406Gene3D:1.25.40.10
GeneID:838406Genevisible:Q9LM25GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021GO:GO:0030433GO:GO:0042538
Gramene:AT1G18260.1hmmpanther:PTHR11102hmmpanther:PTHR11102:SF84HOGENOM:HOG000239927
InParanoid:Q9LM25InterPro:IPR006597InterPro:IPR011990KEGG:ath:AT1G18260
KO:K14026OMA:AEWDEFGPaxDb:Q9LM25Pfam:PF08238
Pfam:Q9LM25PhylomeDB:Q9LM25PRIDE:Q9LM25PRO:PR:Q9LM25
ProteinModelPortal:Q9LM25Proteomes:UP000006548Reactome:R-ATH-5358346Reactome:R-ATH-901032
RefSeq:NP_564049.1SMART:SM00671SMR:Q9LM25STRING:3702.AT1G18260.1
SUPFAM:SSF81901TAIR:AT1G18260TMHMM:TMhelixUniGene:At.14948
UniGene:At.67114UniProt:Q9LM25
Coordinates (TAIR10) chr1:-:6279047..6282008
Molecular Weight (calculated) 75946.00 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.29
Length 678 amino acids
Sequence (TAIR10)
(BLAST)
001: MRILSYGIVI LSLLVFSFIE FGVHARPVVL VLSNDDLNSG GDDNGVGESS DFDEFGESEP KSEEELDPGS WRSIFEPDDS TVQAASPQYY SGLKKILSAA
101: SEGNFRLMEE AVDEIEAASS AGDPHAQSIM GFVYGIGMMR EKSKSKSFLH HNFAAAGGNM QSKMALAFTY LRQDMHDKAV QLYAELAETA VNSFLISKDS
201: PVVEPTRIHS GTEENKGALR KSRGEEDEDF QILEYQAQKG NANAMYKIGL FYYFGLRGLR RDHTKALHWF LKAVDKGEPR SMELLGEIYA RGAGVERNYT
301: KALEWLTLAA KEGLYSAFNG IGYLYVKGYG VDKKNYTKAR EYFEKAVDNE DPSGHYNLGV LYLKGIGVNR DVRQATKYFF VAANAGQPKA FYQLAKMFHT
401: GVGLKKNLEM ATSFYKLVAE RGPWSSLSRW ALEAYLKGDV GKALILYSRM AEMGYEVAQS NAAWILDKYG ERSMCMGVSG FCTDKERHER AHSLWWRASE
501: QGNEHAALLI GDAYYYGRGT ERDFVRAAEA YMHAKSQSNA QAMFNLGYMH EHGQGLPFDL HLAKRYYDES LQSDAAARLP VTLALASLWL RRNYADTVLV
601: RVVDSLPEVY PKVETWIENV VFEEGNATIL TLFVCLITIL YLRERQRRQV VVVADPVAAD VAQPLDADVA QHLAAFPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)