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AT1G18250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pathogenesis-related thaumatin superfamily protein
Curator
Summary (TAIR10)
encodes a thaumatin-like protein
Computational
Description (TAIR10)
ATLP-1; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G73620.1); Has 1566 Blast hits to 1554 proteins in 172 species: Archae - 0; Bacteria - 23; Metazoa - 54; Fungi - 80; Plants - 1398; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKS3eggNOG:ENOG4111KEVEMBL:AC069551EMBL:CP002684EMBL:L34693EnsemblPlants:AT1G18250EnsemblPlants:AT1G18250.1
entrez:838405ExpressionAtlas:P50699Gene3D:2.60.110.10GeneID:838405Genevisible:P50699hmmpanther:PTHR31048hmmpanther:PTHR31048:SF1
HOGENOM:HOG000238454InParanoid:P50699InterPro:IPR001938InterPro:IPR017949PANTHER:PTHR31048PaxDb:P50699Pfam:P50699
Pfam:PF00314Pfscan:PS51367PhylomeDB:P50699PIR:B86317PIR:S71175PIRSF:PIRSF002703PRIDE:P50699
PRINTS:PR00347PRO:PR:P50699PROSITE:PS00316PROSITE:PS51367ProteinModelPortal:P50699Proteomes:UP000006548RefSeq:NP_173261.1
scanprosite:PS00316SMART:SM00205SMR:P50699STRING:3702.AT1G18250.2SUPFAM:SSF49870TAIR:AT1G18250tair10-symbols:ATLP-1
TMHMM:TMhelixUniGene:At.326UniProt:P50699
Coordinates (TAIR10) chr1:-:6277024..6278005
Molecular Weight (calculated) 25908.10 Da
IEP (calculated) 8.53
GRAVY (calculated) -0.02
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MASINLFLFA FLLLLSHASA STVIFYNKCK HPVWPGIQPS AGQNLLAGGG FKLPANKAHS LQLPPLWSGR FWGRHGCTFD RSGRGHCATG DCGGSLSCNG
101: AGGEPPATLA EITLGPELDF YDVSLVDGYN LAMSIMPVKG SGQCSYAGCV SDLNQMCPVG LQVRSRNGKR VVACKSACSA FNSPQYCCTG LFGNPQSCKP
201: TAYSKIFKVA CPKAYSYAYD DPTSIATCSK ANYIVTFCPH HRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)