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AT1G18210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: EF hand calcium-binding protein family (TAIR:AT1G73630.1); Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2; Bacteria - 177; Metazoa - 9876; Fungi - 6429; Plants - 6014; Viruses - 0; Other Eukaryotes - 3910 (source: NCBI BLink).
Protein Annotations
BioGrid:23640eggNOG:COG5126eggNOG:KOG0027EMBL:AC034107EMBL:AC069551EMBL:AK229367EMBL:AY045805
EMBL:AY079394EMBL:CP002684EnsemblPlants:AT1G18210EnsemblPlants:AT1G18210.1EnsemblPlants:AT1G18210.2entrez:838401Gene3D:1.10.238.10
GeneID:838401Genevisible:Q9LE22GO:GO:0005509GO:GO:0005773GO:GO:0005886Gramene:AT1G18210.1Gramene:AT1G18210.2
hmmpanther:PTHR10891hmmpanther:PTHR10891:SF573HOGENOM:HOG000233018InParanoid:Q9LE22InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
iPTMnet:Q9LE22KEGG:ath:AT1G18210KO:K13448OMA:FQKMMTSPaxDb:Q9LE22Pfam:PF13499Pfam:PF13833
Pfam:Q9LE22Pfscan:PS50222PhylomeDB:Q9LE22PIR:A86317PRIDE:Q9LE22PRO:PR:Q9LE22PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q9LE22Proteomes:UP000006548RefSeq:NP_173259.1RefSeq:NP_849686.1scanprosite:PS00018SMART:SM00054
SMR:Q9LE22STRING:3702.AT1G18210.1SUPFAM:SSF47473TAIR:AT1G18210UniGene:At.22394UniProt:Q9LE22
Coordinates (TAIR10) chr1:-:6268273..6268785
Molecular Weight (calculated) 18351.20 Da
IEP (calculated) 3.95
GRAVY (calculated) -0.45
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MASANPETAK PTPATVDMAN PEELKKVFDQ FDSNGDGKIS VLELGGVFKA MGTSYTETEL NRVLEEVDTD RDGYINLDEF STLCRSSSSA AEIRDAFDLY
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)