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AT1G18070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation elongation factor EF1A/initiation factor IF2gamma family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity; INVOLVED IN: translational termination; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Yeast eukaryotic release factor (InterPro:IPR003285); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3); Has 80701 Blast hits to 80623 proteins in 18440 species: Archae - 844; Bacteria - 33853; Metazoa - 20485; Fungi - 12327; Plants - 1789; Viruses - 3; Other Eukaryotes - 11400 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2069-MONOMERBioCyc:ARA:GQT-2070-MONOMEReggNOG:COG5256eggNOG:KOG0459EMBL:AY120769EMBL:BT008889EMBL:CP002684
EnsemblPlants:AT1G18070EnsemblPlants:AT1G18070.1EnsemblPlants:AT1G18070.2entrez:838387ExpressionAtlas:Q8L835Gene3D:3.40.50.300GeneID:838387
GO:GO:0003743GO:GO:0003746GO:GO:0003747GO:GO:0003924GO:GO:0005525Gramene:AT1G18070.1Gramene:AT1G18070.2
hmmpanther:PTHR23115hmmpanther:PTHR23115:SF133HOGENOM:HOG000229291InterPro:IPR000795InterPro:IPR003285InterPro:IPR004160InterPro:IPR004161
InterPro:IPR009000InterPro:IPR009001InterPro:IPR027417InterPro:IPR031157KEGG:ath:AT1G18070KO:K03267ncoils:Coil
Pfam:PF00009Pfam:PF03143Pfam:PF03144Pfscan:PS51722PhylomeDB:Q8L835PRINTS:PR00315PRINTS:PR01343
PROSITE:PS00301PROSITE:PS51722Proteomes:UP000006548Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001031063.1RefSeq:NP_173247.1
scanprosite:PS00301SMR:Q8L835STRING:3702.AT1G18070.3SUPFAM:SSF50447SUPFAM:SSF50465SUPFAM:SSF52540TAIR:AT1G18070
UniGene:At.43340UniGene:At.8951UniProt:Q8L835
Coordinates (TAIR10) chr1:-:6214236..6218211
Molecular Weight (calculated) 59245.90 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.36
Length 532 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLEAEIRAL QLESADENNG VVIPEVHNSH EVENLDKAPE DLKDEVQESI PVPDEQEASE DHDEVMLHPV HNPAKAKEKA AQEKAAKEEA EDVAEANKKR
101: HLNVVFIGHV DAGKSTIGGQ ILFLSGQVDD RQIQKYEKEA KDKSRESWYM AYIMDTNEEE RLKGKTVEVG RAHFETESTR FTILDAPGHK SYVPNMISGA
201: SQADIGVLVI SARKGEFETG YERGGQTREH VQLAKTLGVS KLIVVVNKMD DPTVNWSKER YDEIEQKMVP FLKASGYNTK KDVVFLPISG LMGKNMDQRM
301: GQEICPWWSG PSFFEVLDSI EIPPRDPNGP FRMPIIDKFK DMGTVVMGKV ESGSIREGDS LVVMPNKEQV KVVAIYCDED KVKRAGPGEN LRVRITGIED
401: EDILSGFVLS SIVNPVPAVT EFVAQLQILE LLDNAIFTAG YKAILHIHAV VEECEIIELK SQIDLKTRKP MKKKVLFVKN GAAVVCRIQV TNSICIEKFS
501: DFPQLGRFTL RTEGKTIAVG KVTELLSSVS SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)