AT1G18050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G30370.1); Has 226 Blast hits to 225 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 11; Plants - 84; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6209771..6211588 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32980.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||||||
| Length | 285 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLIHHDPDL DGDVDPEAED RDNFHLEEML NEWTDEPPIR HDVYPESDGE GADDSSDIHV RRGDGFLYQK QSFFSGVAFK EAVIDYALRT GHNPTSLWHS 101: NHSSSTTSFR TRVRSFTTSL WLSRRGCYFP VEKRCRVICN RTPADVPPRT RYYADSSARL VFMEGPEMER KMMTSYAGNP KYSFFWSSDR YHAYYQKKLA 201: GYQLHEGPEI KLSDYGIPDV PLRVRVREPP LQIPKPPPGF ASDQKPTMKY PPPPPRKYAA ILPEWITGKE LETIKEGDMD EKQQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)