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AT1G17970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G73760.1); Has 8802 Blast hits to 8789 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 2364; Fungi - 695; Plants - 4341; Viruses - 10; Other Eukaryotes - 1392 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AF428290EMBL:AY116963
EMBL:CP002684EnsemblPlants:AT1G17970EnsemblPlants:AT1G17970.1entrez:838377
Gene3D:3.30.40.10GeneID:838377GO:GO:0008270Gramene:AT1G17970.1
hmmpanther:PTHR22937hmmpanther:PTHR22937:SF18IntAct:Q944L9InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT1G17970OMA:ESEIHRCPfam:PF13639
Pfscan:PS50089PhylomeDB:Q944L9PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_173239.1SMART:SM00184SMR:Q944L9STRING:3702.AT1G17970.1
SUPFAM:SSF57850TAIR:AT1G17970UniGene:At.26262UniProt:Q944L9
Coordinates (TAIR10) chr1:+:6185032..6187202
Molecular Weight (calculated) 41620.30 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.74
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTTIGEHI RLRRARNQTI RHLHAADDDP PLSHVVLPIS QPNRFCNSAM SSFFPLPTSS SNESTRKKPY QTSSFRGMGC YAAAAAAAQE VSVPSVIRYS
101: ADLDARIRKD KKKKKHKHKK KKKKNKGSYE DGSIRILSEE ARDVIDVWCR PGLGFSTDAV IGRSVDPPRG RNIPSSRRKI DVDNNNYNHT LGSSVLPIRF
201: LNQETHSHDI FNSDSTFVTS SRAEPTMLSS RCRGHLPRSY PDDLTEMRML QNGFVMGRIT DSRDNYHELR LDVDSMSYEQ LLELGDRIGY VNTGLKESEI
301: HRCLGKIKPS VSHTLVDRKC SICQDEYERE DEVGELNCGH SFHVHCVKQW LSRKNACPVC KKAAYGKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)