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AT1G17850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5670 Blast hits to 5670 proteins in 1542 species: Archae - 13; Bacteria - 3184; Metazoa - 52; Fungi - 3; Plants - 118; Viruses - 0; Other Eukaryotes - 2300 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1054eggNOG:ENOG410IG3GEMBL:CP002684EnsemblPlants:AT1G17850EnsemblPlants:AT1G17850.1entrez:838364ExpressionAtlas:F4I932
Gene3D:3.40.250.10GeneID:838364Gramene:AT1G17850.1hmmpanther:PTHR22778hmmpanther:PTHR22778:SF18InterPro:IPR001763InterPro:IPR022111
PaxDb:F4I932Pfam:PF00581Pfam:PF12368Pfscan:PS50206PRIDE:F4I932PROSITE:PS50206ProteinModelPortal:F4I932
Proteomes:UP000006548RefSeq:NP_564039.6SMART:SM00450SMR:F4I932STRING:3702.AT1G17850.2SUPFAM:SSF52821TAIR:AT1G17850
UniGene:At.41813UniGene:At.70679UniProt:F4I932
Coordinates (TAIR10) chr1:-:6146470..6148820
Molecular Weight (calculated) 50625.20 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.50
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVSPAATLS VSLTTPLPIT LTKARFSGEP LRLKQYVLSN QICSRPKHLL SEFKPTRRWT FSCKCRNRGR NGYAKFDDEG EDFIVVNFYR FVSIGDPEAE
101: IEKHLSFLKD LNIRGRIYLN EQGINAQYSG PSKDALAYVE WLKGDDRFSD LLVQMSPAMN RHAFPKLKLQ NKPSLYEGGI SHLPLLDPPM RAKPLEPSEW
201: KRKLKDLTDD DEASPSNSGK SYILLDVRNG YEWDVGHFRG AHRPEVDCFR NTSFGLSDEK EAPSDPLINV DKEKTDILMY CTGGIRCDVY STVLRQRGFK
301: NLYTLKGGVS HYLKEEGTAE WVGNLFVFDS RLSLPPAAYN DNVVDKAVGD NVVDEAGRTP QTPVDTSFAR CYLCNSQVQE LRHRNCANLD CNRLFLCCAE
401: CVVDLKGCCC SDCISAPRLR PVLHGVKRYE KWHVYRDSEE QNAPLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)