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AT1G17730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar protein sorting 46.1
Curator
Summary (TAIR10)
Encodes an ESCRT-related protein: CHMP1A/AT1G73030; CHMP1B/AT1G17730. CHMP1A and B mediate multivesicular body sorting of auxin carriers and are required for plant development. ESCRT: Endosomal Sorting Complexes Required For Transport machinery; CHMP: Charged Multivesicular Body Protein/Chromatin Modifying Protein.
Computational
Description (TAIR10)
vacuolar protein sorting 46.1 (VPS46.1); CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT1G73030.1); Has 1319 Blast hits to 1319 proteins in 225 species: Archae - 2; Bacteria - 0; Metazoa - 503; Fungi - 283; Plants - 343; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5491eggNOG:KOG3232EMBL:AC034257EMBL:AK118350
EMBL:AY085606EMBL:CP002684EnsemblPlants:AT1G17730EnsemblPlants:AT1G17730.1
entrez:838349GeneID:838349Genevisible:Q8LE58GO:GO:0000578
GO:GO:0006914GO:GO:0007034GO:GO:0009793GO:GO:0010008
GO:GO:0015031GO:GO:0032509GO:GO:0040007Gramene:AT1G17730.1
hmmpanther:PTHR10476hmmpanther:PTHR10476:SF11InParanoid:Q8LE58IntAct:Q8LE58
InterPro:IPR005024iPTMnet:Q8LE58KEGG:ath:AT1G17730KO:K12197
ncoils:CoilOMA:YMESTMSPaxDb:Q8LE58Pfam:PF03357
Pfam:Q8LE58PhylomeDB:Q8LE58PIR:C86312PRIDE:Q8LE58
PRO:PR:Q8LE58ProteinModelPortal:Q8LE58Proteomes:UP000006548RefSeq:NP_173215.1
STRING:3702.AT1G17730.1TAIR:AT1G17730tair10-symbols:CHMP1Btair10-symbols:VPS46.1
UniGene:At.41817UniProt:Q8LE58
Coordinates (TAIR10) chr1:+:6099210..6100153
Molecular Weight (calculated) 22764.30 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.67
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNTDKLMNQ IFELKFTSKS LQRQARKCEK EERSEKLKVK KAIEKGNMDG ARIYAENAIR KRSEQMNYLR LSSRLDAVVA RLDTQAKMAT ITKSMTNIVK
101: SLESSLTTGN LQKMSETMDS FEKQFVNMEV QAEFMDNAMA GSTSLSTPEG EVNSLMQQVA DDYGLEVSVG LPQPAGHAIP TKTEEKVEED DLTRRLAELK
201: ARG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)