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AT1G17680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetratricopeptide repeat (TPR)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80; Bacteria - 1266; Metazoa - 1500; Fungi - 759; Plants - 424; Viruses - 52; Other Eukaryotes - 1504 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNW8eggNOG:KOG2076EMBL:BT002323EMBL:CP002684EnsemblPlants:AT1G17680EnsemblPlants:AT1G17680.1EnsemblPlants:AT1G17680.2
entrez:838344Gene3D:1.25.40.10GeneID:838344Gramene:AT1G17680.1Gramene:AT1G17680.2hmmpanther:PTHR23082HOGENOM:HOG000029453
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT1G17680KO:K15201OMA:WRKIRATPfam:PF13176
Pfam:PF13414Pfam:PF14559Pfscan:PS50293PhylomeDB:Q8GUP0PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_173210.3
RefSeq:NP_850945.1SMART:SM00028SMR:Q8GUP0STRING:3702.AT1G17680.1SUPFAM:SSF48452TAIR:AT1G17680UniGene:At.16020
UniProt:Q8GUP0
Coordinates (TAIR10) chr1:+:6076388..6082160
Molecular Weight (calculated) 102753.00 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.59
Length 896 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDKGKGVVE GDEGNLISEL EEGPSNMECD KQVLGGDTNY DDKDLNSDEE GLVDDDDDDS DDDDEGDESE EEDDFEAGSV PNTFERPEYE ALAERKRKAL
101: ADSQRNPSNI SNSTSGVEGF MEFMSSGRRR KSRKYKKKGR RPGSKKEVAP DILKRFREAL FLHAHGRDIE ALPILVEVIK QAPAFDIAYY YLSRVSEQLG
201: KTESSSTEAL KIAANIKGSK SPFWKLLYER FKEQENISVA RSYASKAIQA DPDDIPLKYE YADICLNTGK YREAAETFEQ IFRRCPERIE ALKWGVQYFL
301: KSGEGERAAS ILEDHIKSHS SEVGHDVLDL LASVFMKINA HDRALKYIHD VRQIYNVGKE LSSSLKIRQA ICHVHLEEME QAESVLSILP QEAVSEHPEL
401: ITNLADELTN IGNFHSALKY YIEAISEPVN GNLFVKIARC YMSLEERKQA IVFYYKALNE LSDTVDVRIT LASLLLEDGK RDEAVLVLSP PENPDPDTAK
501: LKAWWKNRKI RMNLCQIYHS EGMLEDFANT ALQLVLKWVW RRTVKGKRKR LVLSEHQRNK KRRRPRDAQA SQLRGGPKKW RKIRATLNET RRIRERAAIK
601: AHNEDVCSES EEEVIKDEEY HRLFVDLCKA LASLQRYWEA LEIVNLARRL DAKMLPVETK KELQSLGAKI SCDTMDPKQW FDCVRSVIQQ HPYRLNAWNC
701: YYSVISRLGK RASTEAKFMH HLRSKYRDCV PPILIAGHHF TVTSRHQDAA REYLEAYKLM PESPLINLCV GAALINLALG FRLKNRHECL AQGFAFLYNN
801: LRICSNSQEA LYNVARAYQH VGLVTLAASY YEKVLAIYEK DYTMPKLPNE DPIVAEERKP VNCDLRKEAA HNLHLIYKHS GAFDLARQVL KDHCTF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)