AT1G17680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tetratricopeptide repeat (TPR)-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 5585 Blast hits to 3297 proteins in 567 species: Archae - 80; Bacteria - 1266; Metazoa - 1500; Fungi - 759; Plants - 424; Viruses - 52; Other Eukaryotes - 1504 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6076388..6082160 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102753.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||
| Length | 896 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDKGKGVVE GDEGNLISEL EEGPSNMECD KQVLGGDTNY DDKDLNSDEE GLVDDDDDDS DDDDEGDESE EEDDFEAGSV PNTFERPEYE ALAERKRKAL 101: ADSQRNPSNI SNSTSGVEGF MEFMSSGRRR KSRKYKKKGR RPGSKKEVAP DILKRFREAL FLHAHGRDIE ALPILVEVIK QAPAFDIAYY YLSRVSEQLG 201: KTESSSTEAL KIAANIKGSK SPFWKLLYER FKEQENISVA RSYASKAIQA DPDDIPLKYE YADICLNTGK YREAAETFEQ IFRRCPERIE ALKWGVQYFL 301: KSGEGERAAS ILEDHIKSHS SEVGHDVLDL LASVFMKINA HDRALKYIHD VRQIYNVGKE LSSSLKIRQA ICHVHLEEME QAESVLSILP QEAVSEHPEL 401: ITNLADELTN IGNFHSALKY YIEAISEPVN GNLFVKIARC YMSLEERKQA IVFYYKALNE LSDTVDVRIT LASLLLEDGK RDEAVLVLSP PENPDPDTAK 501: LKAWWKNRKI RMNLCQIYHS EGMLEDFANT ALQLVLKWVW RRTVKGKRKR LVLSEHQRNK KRRRPRDAQA SQLRGGPKKW RKIRATLNET RRIRERAAIK 601: AHNEDVCSES EEEVIKDEEY HRLFVDLCKA LASLQRYWEA LEIVNLARRL DAKMLPVETK KELQSLGAKI SCDTMDPKQW FDCVRSVIQQ HPYRLNAWNC 701: YYSVISRLGK RASTEAKFMH HLRSKYRDCV PPILIAGHHF TVTSRHQDAA REYLEAYKLM PESPLINLCV GAALINLALG FRLKNRHECL AQGFAFLYNN 801: LRICSNSQEA LYNVARAYQH VGLVTLAASY YEKVLAIYEK DYTMPKLPNE DPIVAEERKP VNCDLRKEAA HNLHLIYKHS GAFDLARQVL KDHCTF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)