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AT1G17665.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.818
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to 146 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2084eggNOG:KOG0409EMBL:CP002684EnsemblPlants:AT1G17665EnsemblPlants:AT1G17665.1entrez:838343GeneID:838343
GO:GO:0016021Gramene:AT1G17665.1hmmpanther:PTHR35991hmmpanther:PTHR35991:SF1InParanoid:F4I908KEGG:ath:AT1G17665ncoils:Coil
OMA:AAPHFTQPaxDb:F4I908PRIDE:F4I908ProteinModelPortal:F4I908Proteomes:UP000006548RefSeq:NP_564031.2STRING:3702.AT1G17665.1
TAIR:AT1G17665TMHMM:TMhelixUniGene:At.51655UniProt:F4I908
Coordinates (TAIR10) chr1:-:6072432..6074484
Molecular Weight (calculated) 38920.30 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.73
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAPHFTQLK ITLNPLMYPF LVLSLLTLAL FSFVSAIFFL LKASRSRAAL YSQKLLSESE TKLQPESSLS EISDEAQYQT HENEPTHLTN SRLYELLLSD
101: KKEDDSDWEG DHVKKKKKKK KNRGKKKKSD IRGDESGGEK QLGEGEDGLV LNPRTDSISI SENKPEFVCL YPFTSTSSAT QRKIKQQYDQ LVKCNNAKGL
201: TLAQVGEFAN CLIEAKNELQ HKSEVIKRKF SITKALLFKA DRSSFDRLRQ QIYKLEMEQK RVEEDALVYN WLQQQLKLSP AYKKVLEISA SMELKDKSST
301: ELDNPDDEFS DISFEELLEQ EKKDSFWHKN GRLRTCRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)