AT1G17630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G20230.1); Has 40851 Blast hits to 13793 proteins in 242 species: Archae - 0; Bacteria - 7; Metazoa - 93; Fungi - 89; Plants - 40145; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6064525..6066720 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82276.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.39 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||
| Length | 731 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVHASLWQFR LQIIPWRLRN FCFLTSQCPY TSISSPDTVS VSSYYSLTSN NDQSLFHYFD HLLGLCLTAQ QCRQVHAQVL LSDFIFRSGS LAANLISVYA 101: RLGLLLDARN VFETVSLVLL SDLRLWNSIL KANVSHGLYE NALELYRGMR QRGLTGDGYI LPLILRACRY LGRFGLCRAF HTQVIQIGLK ENLHVVNELL 201: TLYPKAGRMG DAYNLFVEMP VRNRMSWNVM IKGFSQEYDC ESAVKIFEWM QREEFKPDEV TWTSVLSCHS QCGKFEDVLK YFHLMRMSGN AVSGEALAVF 301: FSVCAELEAL SIAEKVHGYV IKGGFEEYLP SRNALIHVYG KQGKVKDAEH LFRQIRNKGI ESWNSLITSF VDAGKLDEAL SLFSELEEMN HVCNVKANVV 401: TWTSVIKGCN VQGRGDDSLE YFRQMQFSKV LANSVTICCI LSICAELPAL NLGREIHGHV IRTSMSENIL VQNALVNMYA KCGLLSEGSL VFEAIRDKDL 501: ISWNSIIKGY GMHGFAEKAL SMFDRMISSG FHPDGIALVA VLSACSHAGL VEKGREIFYS MSKRFGLEPQ QEHYACIVDL LGRVGFLKEA SEIVKNMPME 601: PKVCVLGALL NSCRMHKNVD IAEGIASQLS VLEPERTGSY MLLSNIYSAG GRWEESANVR ALAKKKDLKK VSGSSWIEVK KKKYKFSSGS IVQSEFETIY 701: PVLEDLVSHM LKKGPTHDGN NYEDDLDLWT A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)