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AT1G17620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11890.1); Has 824 Blast hits to 823 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 824; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKRQeggNOG:ENOG410YGGVEMBL:AC022492EMBL:AF446896EMBL:AK227288EMBL:AY052685EMBL:CP002684
EnsemblPlants:AT1G17620EnsemblPlants:AT1G17620.1entrez:838339GeneID:838339GO:GO:0005886GO:GO:0009506GO:GO:0016021
Gramene:AT1G17620.1hmmpanther:PTHR31234hmmpanther:PTHR31234:SF2InterPro:IPR004864KEGG:ath:AT1G17620OMA:FPANKAQPfam:PF03168
PhylomeDB:Q9LNP3Proteomes:UP000006548RefSeq:NP_564029.1STRING:3702.AT1G17620.1SwissPalm:Q9LNP3TAIR:AT1G17620TMHMM:TMhelix
UniGene:At.22670UniProt:Q9LNP3
Coordinates (TAIR10) chr1:+:6062313..6063107
Molecular Weight (calculated) 28289.70 Da
IEP (calculated) 10.68
GRAVY (calculated) -0.02
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDDRVYPAS KPPAIVGGGA PTTNPTFPAN KAQLYNANRP AYRPPAGRRR TSHTRGCCCR CCCWTIFVII LLLLIVAAAS AVVYLIYRPQ RPSFTVSELK
101: ISTLNFTSAV RLTTAISLSV IARNPNKNVG FIYDVTDITL YKASTGGDDD VVIGKGTIAA FSHGKKNTTT LRSTIGSPPD ELDEISAGKL KGDLKAKKAV
201: AIKIVLNSKV KVKMGALKTP KSGIRVTCEG IKVVAPTGKK ATTATTSAAK CKVDPRFKIW KITF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)