AT1G17600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.508 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: leaf whorl, leaf; EXPRESSED DURING: LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G40100.1); Has 24331 Blast hits to 16604 proteins in 714 species: Archae - 19; Bacteria - 1452; Metazoa - 3934; Fungi - 232; Plants - 17994; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6053026..6056572 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118582.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.27 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1049 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSSSAPRVS KYDVFLSFRG EDTRKTIVSH LYAALDSRGI VTFKDDQRLE IGDHISDELH RALGSSSFAV VVLSENYATS RWCLLELQLI MELMKEGRLE 0101: VFPIFYGVDP SVVRHQLGSF SLVKYQGLEM VDKVLRWREA LNLIANLSGV VSSHCVDEAI MVGEIARDIS RRVTLMHKID SGNIVGMKAH MEGLNHLLDQ 0201: ESNEVLLVGI WGMGGIGKTS IVKCLYDQLS PKFPAHCFIE NIKSVSKDNG HDLKHLQKEL LSSILCDDIR LWSVEAGCQE IKKRLGNQKV FLVLDGVDKV 0301: AQVHALAKEK NWFGPGSRII ITTRDMGLLN TCGVEVVYEV KCLDDKDALQ MFKQIAFEGG LPPCEGFDQL SIRASKLAHG LPSAIQAYAL FLRGRTASPE 0401: EWEEALGALE SSLDENIMEI LKISYEGLPK PHQNVFLHVV CLFNGDTLQR ITSLLHGPIP QSSLWIRVLA EKSLIKISTN GSVIMHKLVE QMGREIIRDD 0501: MSLARKFLRD PMEIRVALAF RDGGEQTECM CLHTCDMTCV LSMEASVVGR MHNLKFLKVY KHVDYRESNL QLIPDQPFLP RSLRLFHWDA FPLRALPSGS 0601: DPCFLVELNL RHSDLETLWS GTPMLKSLKR LDVTGSKHLK QLPDLSSITS LEELLLEQCT RLEGIPECIG KRSTLKKLKL SYRGGRRSAL RFFLRKSTRQ 0701: QHIGLEFPDA KVKMDALINI SIGGDITFEF RSKFRGYAEY VSFNSEQQIP IISAMSLQQA PWVISECNRF NSLRIMRFSH KENGESFSFD VFPDFPDLKE 0801: LKLVNLNIRK IPSGICHLDL LEKLDLSGND FENLPEAMSS LSRLKTLWLQ NCFKLQELPK LTQVQTLTLT NCRNLRSLAK LSNTSQDEGR YCLLELCLEN 0901: CKSVESLSDQ LSHFTKLTCL DLSNHDFETL PSSIRDLTSL VTLCLNNCKK LKSVEKLPLS LQFLDAHGCD SLEAGSAEHF EDIPNKEAHT RNDYFQETEM 1001: SSYVLKTQAT RNRQTIRLPK ITHAVMYVGI PICITLVAAL VILLLRVFK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)