suba logo
AT1G17590.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nuclear factor Y, subunit A8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit A8 (NF-YA8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A3 (TAIR:AT1G72830.1); Has 686 Blast hits to 686 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 143; Fungi - 132; Plants - 381; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5224eggNOG:KOG1561EMBL:AB493463EnsemblPlants:AT1G17590EnsemblPlants:AT1G17590.1EnsemblPlants:AT1G17590.2EnsemblPlants:AT1G17590.3
EnsemblPlants:AT1G17590.4entrez:838335ExpressionAtlas:C0SUW0GeneID:838335GO:GO:0003677GO:GO:0003700GO:GO:0016602
Gramene:AT1G17590.1Gramene:AT1G17590.2Gramene:AT1G17590.3Gramene:AT1G17590.4InterPro:IPR001289InterPro:IPR018362KEGG:ath:AT1G17590
KO:K08064OMA:QATIWNPPaxDb:C0SUW0Pfam:PF02045Pfam:Q9LNP6Pfscan:PS51152PhylomeDB:C0SUW0
PRIDE:C0SUW0PRINTS:PR00616PROSITE:PS00686PROSITE:PS51152ProteinModelPortal:C0SUW0RefSeq:NP_001185024.1RefSeq:NP_173202.1
RefSeq:NP_973850.1RefSeq:NP_973851.1scanprosite:PS00686SMART:SM00521SMR:C0SUW0STRING:3702.AT1G17590.1TAIR:AT1G17590
tair10-symbols:NF-YA8UniGene:At.15174UniProt:C0SUW0UniProt:Q9LNP6
Coordinates (TAIR10) chr1:-:6050481..6051984
Molecular Weight (calculated) 36464.60 Da
IEP (calculated) 9.58
GRAVY (calculated) -0.67
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKKVSFTSS VAHSTPPYLS TSISWGLPTK SNGVTESLSL KVVDARPERL INTKNISFQD QDSSSTLSSA QSSNDVTSSG DDNPSRQISF LAHSDVCKGF
101: EETQRKRFAI KSGSSTAGIA DIHSSPSKAN FSFHYADPHF GGLMPAAYLP QATIWNPQMT RVPLPFDLIE NEPVFVNAKQ FHAIMRRRQQ RAKLEAQNKL
201: IKARKPYLHE SRHVHALKRP RGSGGRFLNT KKLQESTDPK QDMPIQQQHA TGNMSRFVLY QLQNSNDCDC STTSRSDITS ASDSVNLFGH SEFLISDCPS
301: QTNPTMYVHG QSNDMHGGRN THHFSVHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)