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AT1G17550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.470
nucleus 0.395
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homology to ABI2
Curator
Summary (TAIR10)
Protein Phosphatase 2C
Computational
Description (TAIR10)
homology to ABI2 (HAB2); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: homology to ABI1 (TAIR:AT1G72770.3); Has 6552 Blast hits to 6537 proteins in 424 species: Archae - 4; Bacteria - 229; Metazoa - 1602; Fungi - 744; Plants - 2705; Viruses - 7; Other Eukaryotes - 1261 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G17550-MONOMERBioGrid:23570DIP:DIP-48989NEC:3.1.3.16eggNOG:COG0631eggNOG:KOG0698EMBL:AC022492
EMBL:AK118656EMBL:CP002684EnsemblPlants:AT1G17550EnsemblPlants:AT1G17550.1entrez:838330Gene3D:3.60.40.10GeneID:838330
Genevisible:Q9LNP9GO:GO:0004722GO:GO:0009738GO:GO:0046872Gramene:AT1G17550.1hmmpanther:PTHR13832hmmpanther:PTHR13832:SF335
HOGENOM:HOG000233896InParanoid:Q9LNP9InterPro:IPR000222InterPro:IPR001932InterPro:IPR015655KEGG:ath:AT1G17550KO:K14497
OMA:SICGGRSPANTHER:PTHR13832PaxDb:Q9LNP9Pfam:PF00481Pfam:Q9LNP9Pfscan:PS51746PhylomeDB:Q9LNP9
PRIDE:Q9LNP9PRO:PR:Q9LNP9PROSITE:PS01032PROSITE:PS51746ProteinModelPortal:Q9LNP9Proteomes:UP000006548RefSeq:NP_173199.2
scanprosite:PS01032SMART:SM00332SMR:Q9LNP9STRING:3702.AT1G17550.1SUPFAM:SSF81606TAIR:AT1G17550tair10-symbols:HAB2
UniGene:At.41827UniProt:Q9LNP9
Coordinates (TAIR10) chr1:+:6034917..6036939
Molecular Weight (calculated) 56064.70 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.16
Length 511 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEISPAVAL TLGLANTMCD SGISSTFDIS ELENVTDAAD MLCNQKRQRY SNGVVDCIMG SVSEEKTLSE VRSLSSDFSV TVQESEEDEP LVSDATIISE
101: GLIVVDARSE ISLPDTVETD NGRVLATAII LNETTIEQVP TAEVLIASLN HDVNMEVATS EVVIRLPEEN PNVARGSRSV YELECIPLWG TISICGGRSE
201: MEDAVRALPH FLKIPIKMLM GDHEGMSPSL PYLTSHFFGV YDGHGGAQVA DYCHDRIHSA LAEEIERIKE ELCRRNTGEG RQVQWEKVFV DCYLKVDDEV
301: KGKINRPVVG SSDRMVLEAV SPETVGSTAV VALVCSSHII VSNCGDSRAV LLRGKDSMPL SVDHKPDRED EYARIEKAGG KVIQWQGARV SGVLAMSRSI
401: GDQYLEPFVI PDPEVTFMPR AREDECLILA SDGLWDVMSN QEACDFARRR ILAWHKKNGA LPLAERGVGE DQACQAAAEY LSKLAIQMGS KDNISIIVID
501: LKAQRKFKTR S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)