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AT1G17420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lipoxygenase 3
Curator
Summary (TAIR10)
Lipoxygenase
Computational
Description (TAIR10)
lipoxygenase 3 (LOX3); FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, response to fungus, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT1G72520.1); Has 1470 Blast hits to 1436 proteins in 179 species: Archae - 0; Bacteria - 76; Metazoa - 529; Fungi - 49; Plants - 787; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
BioGrid:23554BRENDA:1.13.11.12EC:1.13.11.12eggNOG:ENOG410IEKP
eggNOG:ENOG410YN4NEMBL:AC007843EMBL:AC022492EMBL:AJ249794
EMBL:AY075625EMBL:BT006348EMBL:CP002684EnsemblPlants:AT1G17420
EnsemblPlants:AT1G17420.1entrez:838314Gene3D:2.60.60.20Gene3D:4.10.372.10
GeneID:838314Genevisible:Q9LNR3GO:GO:0009507GO:GO:0009555
GO:GO:0009611GO:GO:0009620GO:GO:0009644GO:GO:0009753
GO:GO:0009901GO:GO:0016165GO:GO:0031408GO:GO:0034440
GO:GO:0046872GO:GO:0048653GO:GO:0080086Gramene:AT1G17420.1
gramene_pathway:1.13.11.12gramene_pathway:PWY-5410gramene_pathway:PWY-735hmmpanther:PTHR11771
hmmpanther:PTHR11771:SF38HOGENOM:HOG000230469InParanoid:Q9LNR3IntAct:Q9LNR3
InterPro:IPR000907InterPro:IPR001024InterPro:IPR001246InterPro:IPR013819
InterPro:IPR020833InterPro:IPR020834InterPro:IPR027433KEGG:ath:AT1G17420
KO:K00454OMA:WSAIGNWPANTHER:PTHR11771PaxDb:Q9LNR3
Pfam:PF00305Pfam:PF01477Pfam:Q9LNR3Pfscan:PS50095
Pfscan:PS51393PhylomeDB:Q9LNR3PRIDE:Q9LNR3PRINTS:PR00087
PRINTS:PR00468PRO:PR:Q9LNR3PROSITE:PS00081PROSITE:PS00711
PROSITE:PS50095PROSITE:PS51393ProteinModelPortal:Q9LNR3Proteomes:UP000006548
Reactome:R-ATH-2142691Reactome:R-ATH-2142696Reactome:R-ATH-2142700Reactome:R-ATH-2142712
Reactome:R-ATH-2142770RefSeq:NP_564021.1scanprosite:PS00081scanprosite:PS00711
SMART:SM00308SMR:Q9LNR3STRING:3702.AT1G17420.1SUPFAM:SSF48484
SUPFAM:SSF49723TAIR:AT1G17420tair10-symbols:LOX3UniGene:At.20467
UniGene:At.64244UniGene:At.67022UniPathway:UPA00382UniProt:Q9LNR3
Coordinates (TAIR10) chr1:+:5977512..5981384
Molecular Weight (calculated) 103732.00 Da
IEP (calculated) 8.01
GRAVY (calculated) -0.43
Length 919 amino acids
Sequence (TAIR10)
(BLAST)
001: MALAKELMGY PLITERSSLV SSASHFKKRT QSTQFSINPF DRRPRKTKSG VVAAISEDLV KTLRFSTTTG DRKSEEEEKA AVKFKVRAVV TVRNKNKEDL
101: KETLVKHLDA FADKIGRNIV LELISTQLDP KTKLPKKSNA AVLKDWSKKS KTKAERVHYT AEFTVDAAFG SPGAITVMNK HQKEFFLESI TIEGFALGPV
201: HFPCNSWVQS QKDHPDKRIF FTNQPYLPNE TPSGLRVLRE KELKNLRGDG SGVRKLSDRI YDFDVYNDLG NPDKSSELSR PKLGGKEVPY PRRCRTGRQS
301: TVSDKDAESR VEKPLPMYVP RDEQFEESKQ DTFAAGRLKA VLHHLIPSLK ASIVAEDFAD FGEIDRLYKE GLLLKLGFQD DIFKKFPLPK VVVDTLQEST
401: KGLLKYDTPK ILSKDKNAWL RDDEFARQAI AGINPVNIER VKTFPPVSNL DPKIYGPQHS ALTDDHIIGH LDGFSVQQAL EENRLYMLDY HDIFLPFLDR
501: INALDGRKAY ATRTIFFLTR LGTLKPVAIE LSLPPHGPKH RSKRVLTPPV DATSNWMWQL AKAHVSSNDA GVHQLVNHWL RTHACLEPFI LAAHRQLSAM
601: HPIFKLLDPH MRYTLEINAL ARQSLISADG VIEGGFTAGA YGMEMSAAAY KSSWRFDMEG LPADLIRRGM AIPDATQPHG LKLLIEDYPY ANDGLLLWSA
701: IQTWVRTYVE RYYPNPNLIK TDSELQSWYS ESINVGHADL RDADWWPELS TVDDLVSILT TLIWLASAQH AALNFGQYPY GGYVPNRPPL MRRLIPDESD
801: PEYASFISHP EKYYFSSMPS LAQTSKFMAV VDTLSTHSPD EEYIGERQQP SIWTGDAEIV EAFYGFAAEI GRIEKEIEKR NADPDRRNRC GAGVLPYELL
901: VPSSEPGVTC RGVPNSVSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)