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AT1G17300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17285.1); Has 27 Blast hits to 27 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0436eggNOG:KOG0258EMBL:CP002684EnsemblPlants:AT1G17300EnsemblPlants:AT1G17300.1entrez:838302GeneID:838302
Gramene:AT1G17300.1KEGG:ath:AT1G17300OMA:SINTKYAPaxDb:F4I7I1PRIDE:F4I7I1Proteomes:UP000006548RefSeq:NP_173174.1
STRING:3702.AT1G17300.1TAIR:AT1G17300UniGene:At.70430UniProt:F4I7I1
Coordinates (TAIR10) chr1:+:5926994..5927440
Molecular Weight (calculated) 12678.90 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.82
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHSSQAARD LHVSKEMKKE PLKGEKDSLR RIPRGGSNPI QIDKDQEKAS VRGEKDSFRR VPTPTPASSS RHLSASSSDI SASDSSSSLP VTLDSINTKV
101: LKYEYAVRGE IINIGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)