suba logo
AT1G17250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.629
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : receptor like protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 3 (RLP3); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 2 (TAIR:AT1G17240.1); Has 81484 Blast hits to 24794 proteins in 958 species: Archae - 37; Bacteria - 4331; Metazoa - 15807; Fungi - 760; Plants - 53957; Viruses - 2; Other Eukaryotes - 6590 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G17250-MONOMEReggNOG:COG4886eggNOG:KOG0619EMBL:AC007651
EMBL:CP002684EnsemblPlants:AT1G17250EnsemblPlants:AT1G17250.1entrez:838296
Gene3D:3.80.10.10GeneID:838296GO:GO:0009620GO:GO:0016021
GO:GO:0045087Gramene:AT1G17250.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF208
HOGENOM:HOG000116551InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210
InterPro:IPR032675KEGG:ath:AT1G17250OMA:PSTIWKTPfam:PF08263
Pfam:PF13855Pfscan:PS51450PhylomeDB:Q9SHI4PIR:G86308
PROSITE:PS51450Proteomes:UP000006548RefSeq:NP_173168.1SMART:SM00369
SMR:Q9SHI4STRING:3702.AT1G17250.1SUPFAM:SSF52058TAIR:AT1G17250
tair10-symbols:AtRLP3tair10-symbols:RLP3TMHMM:TMhelixUniGene:At.41846
UniGene:At.73089UniProt:Q9SHI4
Coordinates (TAIR10) chr1:-:5901169..5903439
Molecular Weight (calculated) 83644.50 Da
IEP (calculated) 6.94
GRAVY (calculated) 0.02
Length 756 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNEGRFKAK GFVRTSSTTR PIQALSFHMI GILLQCVLFI SVLSIAVSEA LCNSQDRESL LWFSGNVSSS VSPLNWNPSI DCCSWEGITC DDSPDSHITA
101: ISLPFRALYG KLPLSVLRLH HLSQLNLSHN RLSGHLPSGF LSALDQLKVL DLSYNSLDGE LPVEQTFRNG SNRCFPIRIV DLSSNFLQGE ILPSSIFMQG
201: TFDLISFNVS KNSFTGSIPS FMCKSSPQLS KLDFSYNDFT GNIPQGLGRC LKLSVLQAGF NNISGEIPSD IYNLSELEQL FLPVNHLSGK INDDITHLTK
301: LKSLELYSNH LGGEIPMDIG QLSRLQSLQL HINNITGTVP PSLANCTNLV KLNLRLNRLE GTLSELDFSR FQSLSILDLG NNSFSGDFPW RVHSCKSLSA
401: MRFASNKLTG QISPHVLELE SLSILSLSDN KLMNITGALG ILQGCRNLST LLIGKNFYNE TFPSDKDLIS SDGFPNLQIF ASGGSGLRGE IPAWLIKLKS
501: LAVIDLSHNQ LVGSIPGWLG TFPHLFYIDL SENLLSGELP KDLFQLKALM SQKAYDATER NYLKLPVFVS PNNVTTHQQY NQLFSLPPGI YIRRNNLKGS
601: IPIEVGQLKV LHVLELSHNY LSGIIPHELS KLTSLERLDL SNNHLSGRIP WSLTSLHYMS YFNVVNNSLD GPIPTGSQFD TFPQANFKGN PLLCGGILLT
701: SCKASTKLPA TTTNKADTED EEELKFIFIL GVATGFFVSY CFYWCFFARL DAFISK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)