AT1G17210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IAP-like protein 1 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
IAP-like protein 1 (ILP1); FUNCTIONS IN: zinc ion binding; LOCATED IN: cytosol, nucleus, phragmoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935), Proteinase inhibitor I32, inhibitor of apoptosis (InterPro:IPR001370); BEST Arabidopsis thaliana protein match is: C3HC zinc finger-like (TAIR:AT1G48950.1); Has 488 Blast hits to 287 proteins in 104 species: Archae - 2; Bacteria - 11; Metazoa - 108; Fungi - 61; Plants - 97; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5880502..5884657 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103095.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||
| Length | 958 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEEDVSSQN VNPRSNRNSV ASASASASAT PVDRFRRRAR SPSPPQTAAA SSAGASSPAV LVNAGSVDWT GHGLALSVRS CRTWDRGDLL RRLATFKPSN 101: WLGKPKTASS LACAQKGWVS VDLDKLQCEY CGSILQYSPP QDSLNPPEAD TTGEKFSKQL DDAHESSCPW VGKSCSESLV QFPPTPPSAL IGGYKDRCDG 201: LLQFYSLPIV SPSAIDQMRA SRRPQIDRLL AHANDDLSFR MDNISAAETY KEEAFSNYSR AQKLISLCGW EPRWLPNIQD CEEHSAQSAR NGCPSGPARN 301: QSRLQDPGPS RKQFSASSRK ASGNYEVLGP EYKSESRLPL LDCSLCGVTV RICDFMTTSR PVPFAAINAN LPETSKKMGV TRGTSATSGI NGWFANEGMG 401: QQQNEDVDEA ETSVKRRLVS NVGLSFYQNA AGASSSAQLN MSVTRDNYQF SDRGKEVLWR QPSGSEVGDR AASYESRGPS TRKRSLDDGG STVDRPYLRI 501: QRADSVEGTV VDRDGDEVND DSAGPSKRTR GSDAHEAYPF LYGRDLSVGG PSHSLDAENE REVNRSDPFS EGNEQVMAFP GARDSTRASS VIAMDTICHS 601: ANDDSMESVE NHPGDFDDIN YPSVATAQSA DFNDPSELNF SNQAQQSACF QPAPVRFNAE QGISSINDGE EVLNTETVTA QGRDGPSLGV SGGSVGMGAS 701: HEAEIHGADV SVHRGDSVVG DMEPVAEVIE NLGQSGEFAP DQGLTDDFVP AEMDREGRLG DSQDRVSQSV VRADSGSKIV DSLKAESVES GEKMSNINVL 801: INDDSVHPSL SCNAIVCSGY EASKEEVTQT WESPLNAGFA LPGSSYTAND QGPQNGDSND DIVEFDPIKY HNCYCPWVNE NVAAAGCSSN SSGSSGFAEA 901: VCGWQLTLDA LDSFQSLENP QNQTMESESA ASLCKDDHRT PSQKLLKRHS FISSHGKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)