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AT1G17200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.920
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G14380.1); Has 681 Blast hits to 681 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 681; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:23531eggNOG:ENOG410IWMSeggNOG:ENOG4112CWQEMBL:AC007651EMBL:AY063938EMBL:AY086826EMBL:AY150408
EMBL:CP002684EnsemblPlants:AT1G17200EnsemblPlants:AT1G17200.1entrez:838291ExpressionAtlas:Q8VZQ3GeneID:838291Genevisible:Q8VZQ3
GO:GO:0005829GO:GO:0005886GO:GO:0016021GO:GO:0016226GO:GO:0051536GO:GO:0080167hmmpanther:PTHR11615
hmmpanther:PTHR11615:SF151HOGENOM:HOG000238912InParanoid:Q8VZQ3InterPro:IPR006459InterPro:IPR006702iPTMnet:Q8VZQ3OMA:FCHKATA
PaxDb:Q8VZQ3Pfam:PF04535Pfam:Q8VZQ3PhylomeDB:Q8VZQ3PIR:B86308PRIDE:Q8VZQ3PRO:PR:Q8VZQ3
Proteomes:UP000006548RefSeq:NP_564017.1STRING:3702.AT1G17200.1TAIR:AT1G17200TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelix
UniGene:At.24418UniProt:Q8VZQ3
Coordinates (TAIR10) chr1:+:5878493..5879871
Molecular Weight (calculated) 21879.20 Da
IEP (calculated) 5.59
GRAVY (calculated) 0.40
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSNDHDKA SHGGSGGGAT EKWEETSLGI RTAETMLRLA PVGLCVAALV VMLKDSETNE FGSISYSNLT AFRYLVHANG ICAGYSLLSA AIAAMPRSSS
101: TMPRVWTFFC LDQLLTYLVL AAGAVSAEVL YLAYNGDSAI TWSDACSSYG GFCHRATASV IITFFVVCFY IVLSLISSYK LFTRFDPPSI VDSAKNLEVA
201: VFGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)