AT1G17160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pfkB-like carbohydrate kinase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, D-ribose catabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 24314 Blast hits to 24305 proteins in 2661 species: Archae - 422; Bacteria - 18834; Metazoa - 425; Fungi - 293; Plants - 520; Viruses - 0; Other Eukaryotes - 3820 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5867678..5869215 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40191.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 379 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMKGISSVSQ SINYNPYIEF NRPQLQISTV NPNPAQSRFS RPRSLRVLSL SADPSANRNP KSAVDAHAPP LVVVGSANAD IYVEIERLPK EGETISAKTG 101: QTLAGGKGAN QAACGAKLMY PTYFVGRLGE DAHGKLIAEA LGDDGCGVHL DYVRSVNNEP TGHAVVMLQS DGQNSIIIVG GANMKAWPEI MSDDDLEIVR 201: NAGIVLLQRE IPDSINIQVA KAVKKAGVPV ILDVGGMDTP IPNELLDSID ILSPNETELS RLTGMPTETF EQISQAVAKC HKLGVKQVLV KLGSKGSALF 301: IQGEKPIQQS IIPAAQVVDT TGAGDTFTAA FAVAMVEGKS HEECLRFAAA AASLCVQVKG AIPSMPDRKS VLKLLKFSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)