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AT1G17130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Family of unknown function (DUF572)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Family of unknown function (DUF572) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT2G32050.1); Has 1377 Blast hits to 1314 proteins in 254 species: Archae - 0; Bacteria - 51; Metazoa - 442; Fungi - 351; Plants - 150; Viruses - 5; Other Eukaryotes - 378 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5134eggNOG:KOG2989EMBL:AC007651EMBL:AK228853EMBL:BT011615EMBL:BT012261EMBL:CP002684
EnsemblPlants:AT1G17130EnsemblPlants:AT1G17130.1entrez:838283ExpressionAtlas:Q9SHH1GeneID:838283Gramene:AT1G17130.1hmmpanther:PTHR12111
hmmpanther:PTHR12111:SF1HOGENOM:HOG000160812InterPro:IPR007590ncoils:CoilPANTHER:PTHR12111Pfam:PF04502PhylomeDB:Q9SHH1
PIR:B86307Proteomes:UP000006548RefSeq:NP_173156.1STRING:3702.AT1G17130.2TAIR:AT1G17130UniGene:At.48200UniGene:At.70431
UniProt:Q9SHH1
Coordinates (TAIR10) chr1:+:5854264..5856472
Molecular Weight (calculated) 37640.20 Da
IEP (calculated) 5.69
GRAVY (calculated) -1.02
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MGERKVLNKY YPPDFDPAKL QRLRRPKNQQ IKVRMMLPMS VRCGTCGNYI YKGTKFNSRK EDVIGETYLG IQIFRFYFKC TKCSAELTMK TDPQNSDYIV
101: ESGASRNYEP WRAEDEEVDK DKQKRDAEEM GDAMKSLENR TLDSKREMDI IAALDEMKSM KSRHATVSVD AMLEALQRTG AEKVKRIEEE DEAVIKSIFG
201: KQKEVIRRIA DEEIDDDYDD DDIDDYPSLQ KEKKGSSSDL SKKRKATEVS PSNPTDILTS SSAENPKEPK KQAISKQPFK SVHIKVIKKQ PQPTSSSTPA
301: PAKPEEKKSD GAANTSLASL FQNYGSDEDE D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)