AT1G17120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cationic amino acid transporter 8 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cationic amino acid transporter 8 (CAT8); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: intracellular membrane-bounded organelle, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 5 (TAIR:AT2G34960.1); Has 31846 Blast hits to 31753 proteins in 2313 species: Archae - 496; Bacteria - 26086; Metazoa - 1876; Fungi - 1926; Plants - 406; Viruses - 0; Other Eukaryotes - 1056 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5851964..5853736 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64865.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 590 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPASMEEAH QLESRSDDLS QRRSYWRWRK QDFFPEFSFQ SFSTYKSALS ATCPRLADRL LSRSSDAYEL DAARRESENP MRRCLTWWDL LWLSFGSVVG 101: SGVFVITGQE ARVGAGPAVV LSYAISGVSA LLSVLCYAEF GVEIPVAGGS FSYLRVELGD FIAFIAAGNI LLEAMVGAAG LGRSWSSYLA SLVKNDSDYF 201: RIKVDSFAKG FDLLDPVAVA VLLVANGIAM TGTKRTSWLN LITSMVTVCI IVFIVVVGFT HSKTSNLVPF FPYGAKGVVQ SAAVVYWSYT GFDMVANMAE 301: ETEKPSRDIP IGLVGSMSMI TVVYCLMALA LTMMVKYTEI DANAAYSVAF AQIGMKWAKY LVGICALKGM TTSLLVGSLG QARYTTQIAR SHMIPPWFAL 401: VHPKTGTPIY ATLLVTILSS IISFFTSLEV LSSVFSFATL FIFMLVAVAL LVRRYYVKDV TPEAGLLKFL GFLFLIIASS IGVSALWNSG VKGWIAYTVT 501: GVIWFIGTLG LALLPKYRVP KVWGVPLVPW LPSFSIAMNL FLIGSLGYVA FLRFIICTMV MLLYYLFVGL HATYDVAHQP LEEAKFEGER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)