suba logo
AT1G17120.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cationic amino acid transporter 8
Curator
Summary (TAIR10)
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs.
Computational
Description (TAIR10)
cationic amino acid transporter 8 (CAT8); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: intracellular membrane-bounded organelle, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 5 (TAIR:AT2G34960.1); Has 31846 Blast hits to 31753 proteins in 2313 species: Archae - 496; Bacteria - 26086; Metazoa - 1876; Fungi - 1926; Plants - 406; Viruses - 0; Other Eukaryotes - 1056 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0531eggNOG:KOG1286EMBL:AC007651EMBL:AY072181EMBL:AY117296EMBL:CP002684EnsemblPlants:AT1G17120
EnsemblPlants:AT1G17120.1entrez:838282GeneID:838282Genevisible:Q9SHH0GO:GO:0005774GO:GO:0005886GO:GO:0015179
GO:GO:0015807GO:GO:0016021GO:GO:0043231GO:GO:1902475Gramene:AT1G17120.1hmmpanther:PTHR11785hmmpanther:PTHR11785:SF273
HOGENOM:HOG000237636InParanoid:Q9SHH0InterPro:IPR002293InterPro:IPR029485iPTMnet:Q9SHH0KEGG:ath:AT1G17120OMA:VGVHATY
PANTHER:PTHR11785PaxDb:Q9SHH0Pfam:PF13520Pfam:PF13906Pfam:Q9SHH0PhylomeDB:Q9SHH0PIR:A86307
PRIDE:Q9SHH0PRO:PR:Q9SHH0ProteinModelPortal:Q9SHH0Proteomes:UP000006548RefSeq:NP_173155.1SMR:Q9SHH0STRING:3702.AT1G17120.1
TAIR:AT1G17120tair10-symbols:CAT8TCDB:2.A.3.3.11TMHMM:TMhelixUniGene:At.27889UniProt:Q9SHH0
Coordinates (TAIR10) chr1:+:5851964..5853736
Molecular Weight (calculated) 64865.70 Da
IEP (calculated) 8.56
GRAVY (calculated) 0.59
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPASMEEAH QLESRSDDLS QRRSYWRWRK QDFFPEFSFQ SFSTYKSALS ATCPRLADRL LSRSSDAYEL DAARRESENP MRRCLTWWDL LWLSFGSVVG
101: SGVFVITGQE ARVGAGPAVV LSYAISGVSA LLSVLCYAEF GVEIPVAGGS FSYLRVELGD FIAFIAAGNI LLEAMVGAAG LGRSWSSYLA SLVKNDSDYF
201: RIKVDSFAKG FDLLDPVAVA VLLVANGIAM TGTKRTSWLN LITSMVTVCI IVFIVVVGFT HSKTSNLVPF FPYGAKGVVQ SAAVVYWSYT GFDMVANMAE
301: ETEKPSRDIP IGLVGSMSMI TVVYCLMALA LTMMVKYTEI DANAAYSVAF AQIGMKWAKY LVGICALKGM TTSLLVGSLG QARYTTQIAR SHMIPPWFAL
401: VHPKTGTPIY ATLLVTILSS IISFFTSLEV LSSVFSFATL FIFMLVAVAL LVRRYYVKDV TPEAGLLKFL GFLFLIIASS IGVSALWNSG VKGWIAYTVT
501: GVIWFIGTLG LALLPKYRVP KVWGVPLVPW LPSFSIAMNL FLIGSLGYVA FLRFIICTMV MLLYYLFVGL HATYDVAHQP LEEAKFEGER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)