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AT1G17080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.947
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L18ae family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L18ae family; BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT1G53560.1); Has 119 Blast hits to 119 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ26eggNOG:ENOG41122XGEMBL:AC007651EMBL:AY045595EMBL:AY097384EMBL:CP002684EnsemblPlants:AT1G17080
EnsemblPlants:AT1G17080.1entrez:838278GeneID:838278GO:GO:0005840GO:GO:0016021Gramene:AT1G17080.1hmmpanther:PTHR10052
hmmpanther:PTHR10052:SF9HOGENOM:HOG000241589KEGG:ath:AT1G17080OMA:GWCLFITPIR:F86306Proteomes:UP000006548RefSeq:NP_564013.1
STRING:3702.AT1G17080.1TAIR:AT1G17080TMHMM:TMhelixUniGene:At.20092UniGene:At.69774UniProt:Q9SHG7
Coordinates (TAIR10) chr1:-:5840458..5841536
Molecular Weight (calculated) 16679.90 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.08
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)