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AT1G17050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : solanesyl diphosphate synthase 2
Curator
Summary (TAIR10)
Encodes a protein with solanesyl diphosphate synthase activity.
Computational
Description (TAIR10)
solanesyl diphosphate synthase 2 (SPS2); FUNCTIONS IN: trans-octaprenyltranstransferase activity; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 1 (TAIR:AT1G78510.1); Has 16766 Blast hits to 16738 proteins in 2950 species: Archae - 341; Bacteria - 9538; Metazoa - 427; Fungi - 613; Plants - 416; Viruses - 0; Other Eukaryotes - 5431 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G17050-MONOMERBioCyc:MetaCyc:AT1G17050-MONOMERBioGrid:23515BRENDA:2.5.1.85EC:2.5.1.85eggNOG:COG0142eggNOG:KOG0776
EMBL:AB104727EMBL:AB188498EMBL:AC007651EMBL:BT004246EMBL:BT028962EMBL:CP002684EnsemblPlants:AT1G17050
EnsemblPlants:AT1G17050.1entrez:838275Gene3D:1.10.600.10GeneID:838275Genevisible:Q76FS5GO:GO:0008299GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0010236GO:GO:0015979GO:GO:0046872GO:GO:0050347GO:GO:0052924
Gramene:AT1G17050.1gramene_pathway:2.5.1.-gramene_pathway:2.5.1.11gramene_pathway:2.5.1.29gramene_pathway:2.5.1.30gramene_pathway:2.5.1.33gramene_pathway:2.5.1.85
gramene_pathway:PWY-5120gramene_pathway:PWY-5805-ARAgramene_pathway:PWY-6520gramene_pathway:PWYQT-4449gramene_plant_reactome:1119367gramene_plant_reactome:6873833hmmpanther:PTHR12001
hmmpanther:PTHR12001:SF18HOGENOM:HOG000009104InterPro:IPR000092InterPro:IPR008949InterPro:IPR014120InterPro:IPR017446KEGG:ath:AT1G17050
KO:K05356ncoils:CoilOMA:MSCRNIDPANTHER:PTHR12001PANTHER:PTHR12001:SF18PaxDb:Q76FS5Pfam:PF00348
Pfam:Q76FS5PhylomeDB:Q76FS5PIR:C86306PRIDE:Q76FS5PRO:PR:Q76FS5PROSITE:PS00444PROSITE:PS00723
ProteinModelPortal:Q76FS5Proteomes:UP000006548RefSeq:NP_173148.2scanprosite:PS00444scanprosite:PS00723SMR:Q76FS5STRING:3702.AT1G17050.1
SUPFAM:SSF48576TAIR:AT1G17050tair10-symbols:SPS2TIGRfam:TIGR02749TIGRFAMs:TIGR02749UniGene:At.43587UniProt:Q76FS5
Coordinates (TAIR10) chr1:+:5829289..5831215
Molecular Weight (calculated) 46047.60 Da
IEP (calculated) 5.25
GRAVY (calculated) -0.07
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMSCRNIDL GTSVLDHSCS SSSTSRRFLF GNSSKTVCMI GGRSCVGNLV FLRRDLATCR AVPAKSKENS LVNGIGQDQT VMLNLRQESR KPISLETLFE
101: VVADDLQRLN DNLLSIVGAE NPVLISAAEQ IFSAGGKRMR PGLVFLVSRA TAELAGLKEL TVEHRRLGEI IEMIHTASLI HDDVLDESDM RRGRETVHEL
201: FGTRVAVLAG DFMFAQASWY LANLENLEVI KLISQVIKDF ASGEIKQASS LFDCDVKLDD YMLKSYYKTA SLVAASTKGA AIFSKVESKV AEQMYQFGKN
301: LGLSFQVVDD ILDFTQSTEQ LGKPAANDLA KGNITAPVIF ALENEPRLRE IIESEFCEPG SLEEAIEIVR NRGGIKKAQE LAKEKAELAL KNLNCLPRSG
401: FRSALEDMVM FNLERID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)