AT1G17040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SH2 domain protein A | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein that contains an SH2 domain. It can pull down a 120-kD tyrosine-phosphorylated protein in vitro. It is predicted to act as a transcription factor. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SH2 domain protein A (SHA); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SH2 motif (InterPro:IPR000980), STAT transcription factor, core (InterPro:IPR001217), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: SH2 domain protein B (TAIR:AT1G78540.1); Has 341 Blast hits to 335 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5825109..5828056 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72640.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.50 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 641 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGDCAIDTE KYSLLEDFNV DVEVENKAFE TFSLCFWVYL LDSTTYPSAI IRQVHSDMSV SAPFLVLDEN KKMMLLPLTL LHREAPDPVN TSSWTEVPNV 101: STTAKFPLQK WVHVGCEVSR NYMRLYICGE LVGEQVLTSL MTNGTNSDCA RKISLFSVGG DGYSVQGFIH SAEVLPSNLS ASYHYTKDPP LWLSVDKPST 201: SGIELDEDGV WSVVSGTFCS LDVVLTNAIG QPVHKDVKVV ASLLYADSGT HVEKRSDFEA FLLVSYEGIE LSAEDKPCNL LNGCASFKFK LSQLSSKSDK 301: RLFCIKFEIP EVKANYPFLE TVTNQIRCIS RNRDSVSSMK RIRLGEEKVS ESKIVNGNGT SMEWRPQNHE EDNSSTDSEN TEMRDSTAFR RYSIPDWIIF 401: KYCLGNLTER ALLLKEITNN SSDEEVSEFA DQVSLYSGCS HHGYQIKMAR KLIAEGTNAW NLISRNYRHV HWDNVVIEIE EHFMRIAKCS SRSLTHQDFD 501: LLRRICGCYE YITQENFETM WCWLFPVASA VSRGLINGMW RSASPKWIEG FVTKEEAERS LQNQVPGTFI LRFPTSRSWP HPDAGSVVVT YVGHDLVIHH 601: RLLTINHICD SSERYTDAKQ LQDMLLAEPE LSRLGRIIRG I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)