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AT1G16920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.500
plasma membrane 0.500
ASURE: golgi,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23532067 (2013): Golgi trans-Golgi network
  • PMID:22974509 (2013): cytosol cell plate
  • PMID:22974509 (2013): Golgi trans-Golgi network
  • PMID:22974509 (2013): plasma membrane
  • PMID:22773752 (2012): Golgi trans-Golgi network early endosome
  • PMID:22773752 (2012): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15060130 (2004): plasma membrane
  • PMID:14760709 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A1B
Curator
Summary (TAIR10)
small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking.
Computational
Description (TAIR10)
RAB GTPase homolog A1B (RABA1b); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: trans-Golgi network, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A1D (TAIR:AT4G18800.1); Has 28198 Blast hits to 28143 proteins in 766 species: Archae - 30; Bacteria - 158; Metazoa - 14550; Fungi - 4232; Plants - 3316; Viruses - 20; Other Eukaryotes - 5892 (source: NCBI BLink).
Protein Annotations
BioGrid:23503eggNOG:COG1100eggNOG:KOG0087EMBL:AC051629EMBL:AK227865EMBL:AY086881EMBL:BT006406
EMBL:CP002684EMBL:L18883EnsemblPlants:AT1G16920EnsemblPlants:AT1G16920.1entrez:838263Gene3D:3.40.50.300GeneID:838263
Genevisible:Q39222GO:GO:0005525GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0006886GO:GO:0007264
GO:GO:0042538GO:GO:0060627Gramene:AT1G16920.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF592HOGENOM:HOG000233968InParanoid:Q39222
InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G16920KO:K07904OMA:LRNHTDSPaxDb:Q39222
Pfam:PF00071Pfam:Q39222Pfscan:PS51419PhylomeDB:Q39222PIR:S59942PRIDE:Q39222PRO:PR:Q39222
PROSITE:PS51419ProteinModelPortal:Q39222Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_173136.1SMR:Q39222STRING:3702.AT1G16920.1
SUPFAM:SSF52540TAIR:AT1G16920tair10-symbols:ATRABA1Btair10-symbols:RAB11tair10-symbols:RABA1bTIGRfam:TIGR00231TIGRFAMs:TIGR00231
UniGene:At.324UniProt:Q39222
Coordinates (TAIR10) chr1:-:5787489..5789147
Molecular Weight (calculated) 24021.50 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.34
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)