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AT1G16850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838256eggNOG:ENOG410J86YeggNOG:ENOG4111BFIEMBL:AC051629EMBL:AF325003EMBL:AK226398EMBL:AY080886
EMBL:AY113974EMBL:CP002684EnsemblPlants:AT1G16850EnsemblPlants:AT1G16850.1entrez:838256GeneID:838256GO:GO:0005783
GO:GO:0009651Gramene:AT1G16850.1hmmpanther:PTHR35463hmmpanther:PTHR35463:SF1HOGENOM:HOG000152428KEGG:ath:AT1G16850OMA:GAGENMK
PhylomeDB:Q9FE54PIR:G86303Proteomes:UP000006548RefSeq:NP_564008.1STRING:3702.AT1G16850.1TAIR:AT1G16850TMHMM:TMhelix
UniGene:At.20693UniProt:Q9FE54
Coordinates (TAIR10) chr1:-:5765062..5765618
Molecular Weight (calculated) 16704.60 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.39
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKVKSGQV FNLLCIFSIF FFLFVLSVNV SADVDSERAV PSEDKTTTVW LTKIKRSGKN YWAKVRETLD RGQSHFFPPN TYFTGKNDAP MGAGENMKEA
101: ATRSFEHSKA TVEEAARSAA EVVSDTAEAV KEKVKRSVSG GVTQPSEGSE EL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)