suba logo
AT1G16790.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribosomal protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ribosomal protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 10 Blast hits to 10 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838250eggNOG:ENOG410J168eggNOG:ENOG410Y1QIEMBL:AK175175EMBL:BT010493EMBL:CP002684EnsemblPlants:AT1G16790
EnsemblPlants:AT1G16790.1entrez:838250GeneID:838250GO:GO:0005840GO:GO:0009507GO:GO:0009535GO:GO:0009536
GO:GO:0009941Gramene:AT1G16790.1HOGENOM:HOG000090877IntAct:Q6NQG3KEGG:ath:AT1G16790OMA:QELISHYPhylomeDB:Q6NQG3
Proteomes:UP000006548RefSeq:NP_173123.1STRING:3702.AT1G16790.1TAIR:AT1G16790UniGene:At.41868UniProt:Q6NQG3
Coordinates (TAIR10) chr1:+:5744638..5745072
Molecular Weight (calculated) 15455.40 Da
IEP (calculated) 10.24
GRAVY (calculated) -0.41
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQPATPNAA EETKSEQKQK SKKFPTPTEL ISHYQKRGLE PAEASIKVIE DLQNALVRVV SSSRNASSKD KLVTDARKID AINGRLAVVD AKLETKPGYV
101: ETFALGLASG ATLNGISAVW PHVTRGIGQI WSAVRIGTDP SSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)