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AT1G16750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF547
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT3G13000.2); Has 699 Blast hits to 674 proteins in 105 species: Archae - 2; Bacteria - 80; Metazoa - 34; Fungi - 2; Plants - 533; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS68eggNOG:ENOG41118FZEMBL:AY126989EMBL:BT001073
EMBL:CP002684EnsemblPlants:AT1G16750EnsemblPlants:AT1G16750.1entrez:838246
GeneID:838246Gramene:AT1G16750.1hmmpanther:PTHR23054hmmpanther:PTHR23054:SF30
HOGENOM:HOG000242056InterPro:IPR006869InterPro:IPR025757KEGG:ath:AT1G16750
ncoils:CoilOMA:YASDELWPfam:PF04784Pfam:PF14389
PhylomeDB:Q8L7U6Proteomes:UP000006548RefSeq:NP_564005.2TAIR:AT1G16750
UniGene:At.16104UniGene:At.60435UniProt:Q8L7U6
Coordinates (TAIR10) chr1:-:5729221..5731689
Molecular Weight (calculated) 59649.20 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.43
Length 529 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGDSLLTSK QGGGSLSIYS QPKNVTKEFN GRDSPKNSKF HHYRFELEHD VKRLKNQLQK ETAMRALLLK ASDQSHKIEL SHASSLPRSV QELLTNIAAM
101: EATVSKLEQE IMSLHFLLIQ ERNERKLAEY NLTHSLSPPN ALDLVRLSEK NESLRPKDHK AQPRSKVAKS LQSFDNANEL SKEMIRCMRN IFVSLGETSA
201: GSKSSQETAS VSSRENPPSS STSWWSPSEH SRISRWAQSP RIDIQKNSDV LATESDVFDL YTVQGKLSWA DIGSYRSATE VASMSVEEKR LGYASDELWR
301: FRNLVERLAR VNPAELSHNE KLAFWINIYN AMIMHAYLAY GVPKTDLKLF SLMQKAAYTV GGHSYNAATI EYMTLKMSPP LHRPQIALLL SILKLKVSDE
401: QRQAGISTPE PLVSFALSCG MHSSPAVRIY SAENVGEELE EAQKDYIQAS VGVSPRGKLI VPQMLHCFAK KSVDDCKVAL WISRHLPPRQ AAFVEQCIHR
501: RQWWGFLGSS SSKCGIVPFD SRFRYLFLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)