suba logo
AT1G16740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L20
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L20; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L20 (InterPro:IPR005813); BEST Arabidopsis thaliana protein match is: ribosomal protein L20 (TAIR:ATCG00660.1); Has 8162 Blast hits to 8162 proteins in 2777 species: Archae - 0; Bacteria - 5193; Metazoa - 126; Fungi - 0; Plants - 621; Viruses - 0; Other Eukaryotes - 2222 (source: NCBI BLink).
Protein Annotations
DNASU:838245eggNOG:COG0292eggNOG:KOG4707EMBL:AY086501
EMBL:BT024573EMBL:CP002684EnsemblPlants:AT1G16740EnsemblPlants:AT1G16740.1
entrez:838245GeneID:838245GO:GO:0003735GO:GO:0005840
GO:GO:0006412GO:GO:0019843Gramene:AT1G16740.1HAMAP:MF_00382
hmmpanther:PTHR10986HOGENOM:HOG000035046InterPro:IPR005813KEGG:ath:AT1G16740
KO:K02887OMA:RKSFPGNPANTHER:PTHR10986Pfam:PF00453
PhylomeDB:Q8LCN1PRINTS:PR00062Proteomes:UP000006548RefSeq:NP_173118.1
SMR:Q8LCN1STRING:3702.AT1G16740.1SUPFAM:SSF74731TAIR:AT1G16740
TIGRfam:TIGR01032TIGRFAMs:TIGR01032UniGene:At.16104UniProt:Q8LCN1
Coordinates (TAIR10) chr1:+:5727773..5728950
Molecular Weight (calculated) 14723.00 Da
IEP (calculated) 11.39
GRAVY (calculated) -0.80
Length 126 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKKEIFKLA KGFRGRAKNC IRIARERVEK ALQYSYRDRR NKKREMRGLW IERINAGSRQ HGVNYGNFIH GLMKENIQLN RKVLSELSMH EPYSFKALVD
101: VSRKSFPGNK NVVQASRKVD ISSINA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)