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AT1G16720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high chlorophyll fluorescence phenotype 173
Curator
Summary (TAIR10)
Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.
Computational
Description (TAIR10)
high chlorophyll fluorescence phenotype 173 (HCF173); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: photosystem II assembly, translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2); Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27; Bacteria - 1263; Metazoa - 9; Fungi - 6; Plants - 464; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0702eggNOG:KOG1203EMBL:AY062632EMBL:AY128723EMBL:CP002684EnsemblPlants:AT1G16720EnsemblPlants:AT1G16720.1
entrez:838243Gene3D:3.40.50.720GeneID:838243GO:GO:0006413GO:GO:0009507GO:GO:0009570GO:GO:0009941
Gramene:AT1G16720.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF343HOGENOM:HOG000238768InterPro:IPR008979InterPro:IPR013857InterPro:IPR016040
KEGG:ath:AT1G16720OMA:SKYDGGMPfam:PF05368Pfam:PF08547Pfam:PF13460PhylomeDB:Q8W4D6Proteomes:UP000006548
RefSeq:NP_173116.1SMR:Q8W4D6STRING:3702.AT1G16720.1SUPFAM:SSF49785SUPFAM:SSF51735TAIR:AT1G16720tair10-symbols:HCF173
UniGene:At.27283UniGene:At.49888UniProt:Q8W4D6
Coordinates (TAIR10) chr1:+:5723161..5726248
Molecular Weight (calculated) 65712.40 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.36
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSIVGSNM AATDARFLSS NFGNSFSINT RIHRFHDRSQ IVIPRAQSSS SPSPSPPSDK KKTKTRPGTI TTKESEETVA KKLDVAPPSP QSPPSPPTLK
101: LDDVNPVGLG RRSRQIFDEV WRKFSGLGQM SRTTRPDEQE TLDSLLIREG PMCEFAVPGA QNVTVLVVGA TSRIGRIVVR KLMLRGYTVK ALVRKQDEEV
201: MSMLPRSVDI VVGDVGEPST LKSAVESCSK IIYCATARST ITADLTRVDH LGVYNLTKAF QDYNNRLAQL RAGKSSKSKL LLAKFKSAES LDGWEIRQGT
301: YFQDTTASKY DGGMDAKFEF TETERAEFSG YVFTRGGYVE LSKKLSLPLG TTLDRYEGLV LSVGGNGRSY VVILEAGPSS DMSQSKQYFA RISTKAGFCR
401: VRVPFSAFRP VNPEDPPLDP FLVHTLTIRF EPKRQRPVDG LAGAQQDLRS FSLVFEYIKA LPAGQETDFI LVSCTGSGVE ANRREQVLKA KRAGEDSLRR
501: SGLGYTIIRP GPLKEEPGGQ RALIFDQGNR ISQGISCADV ADICVKALHD STARNKSFDV CHEYVAEQGI ELYELVAHLP DKANNYLTPA LSVLEKNT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)