AT1G16720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : high chlorophyll fluorescence phenotype 173 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
high chlorophyll fluorescence phenotype 173 (HCF173); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: photosystem II assembly, translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2); Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27; Bacteria - 1263; Metazoa - 9; Fungi - 6; Plants - 464; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5723161..5726248 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65712.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.40 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||
| Length | 598 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGSIVGSNM AATDARFLSS NFGNSFSINT RIHRFHDRSQ IVIPRAQSSS SPSPSPPSDK KKTKTRPGTI TTKESEETVA KKLDVAPPSP QSPPSPPTLK 101: LDDVNPVGLG RRSRQIFDEV WRKFSGLGQM SRTTRPDEQE TLDSLLIREG PMCEFAVPGA QNVTVLVVGA TSRIGRIVVR KLMLRGYTVK ALVRKQDEEV 201: MSMLPRSVDI VVGDVGEPST LKSAVESCSK IIYCATARST ITADLTRVDH LGVYNLTKAF QDYNNRLAQL RAGKSSKSKL LLAKFKSAES LDGWEIRQGT 301: YFQDTTASKY DGGMDAKFEF TETERAEFSG YVFTRGGYVE LSKKLSLPLG TTLDRYEGLV LSVGGNGRSY VVILEAGPSS DMSQSKQYFA RISTKAGFCR 401: VRVPFSAFRP VNPEDPPLDP FLVHTLTIRF EPKRQRPVDG LAGAQQDLRS FSLVFEYIKA LPAGQETDFI LVSCTGSGVE ANRREQVLKA KRAGEDSLRR 501: SGLGYTIIRP GPLKEEPGGQ RALIFDQGNR ISQGISCADV ADICVKALHD STARNKSFDV CHEYVAEQGI ELYELVAHLP DKANNYLTPA LSVLEKNT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)