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AT1G16640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06220.1); Has 242 Blast hits to 231 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838233eggNOG:ENOG410JW62eggNOG:ENOG411058HEMBL:AC011808EMBL:BT012511EMBL:BT014811EMBL:CP002684
EnsemblPlants:AT1G16640EnsemblPlants:AT1G16640.1entrez:838233EvolutionaryTrace:Q9FX77ExpressionAtlas:Q9FX77Gene3D:2.40.330.10GeneID:838233
Genevisible:Q9FX77GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G16640.1hmmpanther:PTHR31920
hmmpanther:PTHR31920:SF15HOGENOM:HOG000097068InParanoid:Q9FX77InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT1G16640OMA:GWENFVK
PaxDb:Q9FX77PDB:1YELPDBsum:1YELPfam:PF02362Pfam:Q9FX77Pfscan:PS50863PhylomeDB:Q9FX77
PIR:E86301PRO:PR:Q9FX77PROSITE:PS50863ProteinModelPortal:Q9FX77Proteomes:UP000006548RefSeq:NP_173109.1SMART:SM01019
SMR:Q9FX77STRING:3702.AT1G16640.1SUPFAM:SSF101936TAIR:AT1G16640UniGene:At.41877UniProt:C0SUV7UniProt:Q9FX77
Coordinates (TAIR10) chr1:+:5686763..5687533
Molecular Weight (calculated) 15792.30 Da
IEP (calculated) 4.20
GRAVY (calculated) -0.75
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MADTGEVQFM KPFISEKSSK SLEIPLGFNE YFPAPFPITV DLLDYSGRSW TVRMKKRGEK VFLTVGWENF VKDNNLEDGK YLQFIYDRDR TFYVIIYGHN
101: MCSEYRDFPQ VAVEVDDYEN GEEEEDGDDQ DKHQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)