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AT1G16440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.560
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : root hair specific 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 3 (RSH3); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: root hair; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC kinase 1.7 (TAIR:AT1G79250.2); Has 101577 Blast hits to 89577 proteins in 2716 species: Archae - 38; Bacteria - 12727; Metazoa - 39279; Fungi - 11275; Plants - 19035; Viruses - 382; Other Eukaryotes - 18841 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G16440-MONOMEREC:2.7.11.1eggNOG:ENOG410XQ0CeggNOG:KOG0610EMBL:AC006341EMBL:CP002684EMBL:DQ446257
EMBL:DQ652840EnsemblPlants:AT1G16440EnsemblPlants:AT1G16440.1entrez:838214GeneID:838214Genevisible:F4I4F2GO:GO:0004674
GO:GO:0005524GO:GO:0005737GO:GO:0005886GO:GO:0016301GO:GO:0035556GO:GO:0080147Gramene:AT1G16440.1
hmmpanther:PTHR24351hmmpanther:PTHR24351:SF86HOGENOM:HOG000233027InParanoid:F4I4F2IntAct:F4I4F2InterPro:IPR000719InterPro:IPR008271
InterPro:IPR011009iPTMnet:F4I4F2KEGG:ath:AT1G16440ncoils:CoilOMA:NRIAYKRPaxDb:F4I4F2Pfam:F4I4F2
Pfam:PF00069Pfscan:PS50011PIR:G86299PRIDE:F4I4F2PRO:PR:F4I4F2PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:F4I4F2Proteomes:UP000006548RefSeq:NP_173094.4scanprosite:PS00108SMART:SM00220SMR:F4I4F2STRING:3702.AT1G16440.1
SUPFAM:SSF56112TAIR:AT1G16440tair10-symbols:RSH3UniGene:At.49682UniGene:At.67624UniProt:F4I4F2
Coordinates (TAIR10) chr1:+:5615841..5617632
Molecular Weight (calculated) 56132.70 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.54
Length 499 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLKPGNKLV SPETSHHRDS ASNSSNHKCQ QQKPRKDKQK QVEQNTKKIE EHQIKSESTL LISNHNVNMS SQSNNSESTS TNNSSKPHTG GDIRWDAVNS
101: LKSRGIKLGI SDFRVLKRLG YGDIGSVYLV ELKGANPTTY FAMKVMDKAS LVSRNKLLRA QTEREILSQL DHPFLPTLYS HFETDKFYCL VMEFCSGGNL
201: YSLRQKQPNK CFTEDAARFF ASEVLLALEY LHMLGIVYRD LKPENVLVRD DGHIMLSDFD LSLRCSVNPT LVKSFNGGGT TGIIDDNAAV QGCYQPSAFF
301: PRMLQSSKKN RKSKSDFDGS LPELMAEPTN VKSMSFVGTH EYLAPEIIKN EGHGSAVDWW TFGIFIYELL HGATPFKGQG NKATLYNVIG QPLRFPEYSQ
401: VSSTAKDLIK GLLVKEPQNR IAYKRGATEI KQHPFFEGVN WALIRGETPP HLPEPVDFSC YVKKEKESLP PAATEKKSKM FDEANKSGSD PDYIVFEYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)