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AT1G16310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.771
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cation efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0053eggNOG:KOG1485EMBL:AC006341EMBL:AK227391EMBL:AY065410EMBL:CP002684EnsemblPlants:AT1G16310
EnsemblPlants:AT1G16310.1entrez:838200Gene3D:1.20.1510.10Gene3D:3.30.70.1350GeneID:838200Genevisible:Q0WU02GO:GO:0005774
GO:GO:0008324GO:GO:0016021Gramene:AT1G16310.1hmmpanther:PTHR11562hmmpanther:PTHR11562:SF20HOGENOM:HOG000205012InParanoid:Q0WU02
InterPro:IPR002524InterPro:IPR027469InterPro:IPR027470KEGG:ath:AT1G16310ncoils:CoilOMA:YNVELLPPANTHER:PTHR11562
PaxDb:Q0WU02Pfam:PF01545Pfam:PF16916Pfam:Q0WU02PhylomeDB:Q0WU02PIR:B86298PRIDE:Q0WU02
PRO:PR:Q0WU02ProteinModelPortal:Q0WU02Proteomes:UP000006548RefSeq:NP_173081.2SMR:Q0WU02STRING:3702.AT1G16310.1SUPFAM:0054606
SUPFAM:SSF160240TAIR:AT1G16310TIGRfam:TIGR01297TIGRFAMs:TIGR01297TMHMM:TMhelixUniGene:At.28496UniProt:Q0WU02
Coordinates (TAIR10) chr1:+:5578435..5580585
Molecular Weight (calculated) 49112.20 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.10
Length 428 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLNSYIFFL FLTTSPRNTF FGIRTHSDRI MATEHITRTG DEYNVELLPS DDDAPPLESS WRLNLDAFQL PSSTGGRHDG RTRFSRYFRT PRKERRVSEY
101: YKKQERLLEG FNEMETIHEN GFASGVPTEE EMKKLAKSER LAVHISNATN LVLFVAKVYA SMESRSMAVI ASTLDSLLDL LSGFILWFTA NAMRKPNQFH
201: YPIGKRRMQP VGIIVFASVM ATLGLQVLLE SGRQLVAKSG IHMNSTEEKW MIGIMVSVTI VKFLLMLYCR GFQNEIVRAY AQDHLFDVVT NSIGLATAVL
301: AVKFYWWIDP TGAILIALYT IATWARTVLE NVHSLIGRSA PPDFLAKLTF LIWNHHEQIK HIDTVRAYTF GSHYFVEVDI VLPEDMRLQE AHNIGETLQE
401: KLEQLAEVER AFVHIDFEFT HRPEHKCN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)