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AT1G16280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20378763 (2010): nucleus nuclear matrix
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA helicase 36
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA helicase 36 (RH36); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: post-embryonic development, embryo sac development, rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 43946 Blast hits to 42938 proteins in 3095 species: Archae - 969; Bacteria - 21832; Metazoa - 6240; Fungi - 4948; Plants - 2606; Viruses - 36; Other Eukaryotes - 7315 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-454-MONOMEREC:3.6.4.13eggNOG:ENOG410XPYCeggNOG:KOG0340EMBL:AC006341EMBL:CP002684EnsemblPlants:AT1G16280
EnsemblPlants:AT1G16280.1entrez:838197Gene3D:3.40.50.300GeneID:838197Genevisible:Q9SA27GO:GO:0003676GO:GO:0004004
GO:GO:0005524GO:GO:0005634GO:GO:0006364GO:GO:0009553GO:GO:0009561GO:GO:0009791GO:GO:0010501
GO:GO:0090406Gramene:AT1G16280.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF302HOGENOM:HOG000268802InParanoid:Q9SA27InterPro:IPR000629
InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9SA27KEGG:ath:AT1G16280
KO:K14778OMA:TPVQTHCPaxDb:Q9SA27Pfam:PF00270Pfam:PF00271Pfam:Q9SA27Pfscan:PS51192
Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9SA27PIR:G86297PRIDE:Q9SA27PRO:PR:Q9SA27PROSITE:PS00039
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9SA27Proteomes:UP000006548RefSeq:NP_173078.1scanprosite:PS00039
SMART:SM00487SMART:SM00490SMR:Q9SA27STRING:3702.AT1G16280.1SUPFAM:SSF52540TAIR:AT1G16280tair10-symbols:AtRH36
tair10-symbols:RH36tair10-symbols:SWA3UniGene:At.51634UniProt:Q9SA27
Coordinates (TAIR10) chr1:-:5568482..5570487
Molecular Weight (calculated) 54838.70 Da
IEP (calculated) 9.27
GRAVY (calculated) -0.30
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEPTPEEEG GITIMSKSRK NPKTVVNIQS QKLDSDQNTP QFEKFTNPNP SSDTTSATNF EGLGLAEWAV ETCKELGMRK PTPVQTHCVP KILAGRDVLG
101: LAQTGSGKTA AFALPILHRL AEDPYGVFAL VVTPTRELAF QLAEQFKALG SCLNLRCSVI VGGMDMLTQT MSLVSRPHIV ITTPGRIKVL LENNPDVPPV
201: FSRTKFLVLD EADRVLDVGF QDELRTIFQC LPKSRQTLLF SATMTSNLQA LLEHSSNKAY FYEAYEGLKT VDTLTQQFIF EDKDAKELYL VHILSQMEDK
301: GIRSAMIFVS TCRTCQRLSL MLDELEVENI AMHSLNSQSM RLSALSKFKS GKVPILLATD VASRGLDIPT VDLVINYDIP RDPRDYVHRV GRTARAGRGG
401: LAVSIITETD VKLIHKIEEE VGKKMEPYNK KVITDSLEVT KVSKAKRVAM MKMLDNGFED KVKDRRKLKR KTLADKGLLK KRGKRQKSTE N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)