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AT1G16240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : syntaxin of plants 51
Curator
Summary (TAIR10)
Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.
Computational
Description (TAIR10)
syntaxin of plants 51 (SYP51); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 837 Blast hits to 837 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 265; Fungi - 234; Plants - 241; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZZA3eggNOG:KOG3202EMBL:AK317530EnsemblPlants:AT1G16240EnsemblPlants:AT1G16240.1EnsemblPlants:AT1G16240.2entrez:838193
ExpressionAtlas:B9DHH7GeneID:838193GO:GO:0005622GO:GO:0006886GO:GO:0016021GO:GO:0061025Gramene:AT1G16240.1
Gramene:AT1G16240.2hmmpanther:PTHR19957hmmpanther:PTHR19957:SF119InterPro:IPR000727InterPro:IPR006012KEGG:ath:AT1G16240KO:K08503
OMA:DSWMREYPaxDb:B9DHH7Pfam:PF05739Pfam:Q9SA23Pfscan:PS50192PhylomeDB:B9DHH7PRIDE:B9DHH7
PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:B9DHH7RefSeq:NP_001031054.1RefSeq:NP_563994.1scanprosite:PS00914SMART:SM00397
STRING:3702.AT1G16240.1SUPFAM:SSF58038TAIR:AT1G16240tair10-symbols:ATSYP51tair10-symbols:SYP51TMHMM:TMhelixUniGene:At.22503
UniProt:B9DHH7UniProt:Q9SA23
Coordinates (TAIR10) chr1:-:5555183..5556340
Molecular Weight (calculated) 25890.40 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.33
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)