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AT1G16180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.486
vacuole 0.480
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serinc-domain containing serine and sphingolipid biosynthesis protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G06170.1); Has 780 Blast hits to 770 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 127; Plants - 141; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7KeggNOG:KOG2592EMBL:AC010924EMBL:CP002684EnsemblPlants:AT1G16180EnsemblPlants:AT1G16180.1EnsemblPlants:AT1G16180.2
entrez:838187GeneID:838187GO:GO:0016021Gramene:AT1G16180.1Gramene:AT1G16180.2hmmpanther:PTHR10383hmmpanther:PTHR10383:SF25
HOGENOM:HOG000165463InterPro:IPR005016KEGG:ath:AT1G16180OMA:SESNYCYPANTHER:PTHR10383Pfam:PF03348PhylomeDB:Q9S9L9
PIR:F86296Proteomes:UP000006548RefSeq:NP_001185008.1RefSeq:NP_173069.1STRING:3702.AT1G16180.1TAIR:AT1G16180TMHMM:TMhelix
UniGene:At.11862UniProt:Q9S9L9
Coordinates (TAIR10) chr1:+:5540905..5542670
Molecular Weight (calculated) 45957.30 Da
IEP (calculated) 6.71
GRAVY (calculated) 0.58
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MFAASCLASC CAACACDACR TVVSGISRRS ARIAYCGLFA LSLIVSWILR EVAAPLMEKL PWINHFHKTP DREWFETDAV LRVSLGNFLF FSILSVMMIG
101: VKNQKDPRDG IHHGGWMMKI ICWCILVIFM FFLPNEIISF YESMSKFGAG FFLLVQVVLL LDFVHGWNDT WVGYDEQFWY AALLVVSLVC YLATFVFSGF
201: LFHWFTPSGH DCGLNTFFII MTLIFVFVFA IVVLHPTVGG SILPASVISL YCMYLCYSGL ASEPRDYECN GLHNHSKAVS TGTMTIGLLT TVLSVVYSAV
301: RAGSSTTLLS PPDSPRAEKP LLPIDGKAEE KEEKENKKPV SYSYAFFHII FSLASMYSAM LLTGWSTSVG ESGKLVDVGW PSVWVRVVTS WATAGLFIWS
401: LVAPILFPDR EF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)