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AT1G16080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IETDeggNOG:ENOG410Y5KQEMBL:AC010924EMBL:AF332460EMBL:AY072208EMBL:CP002684EnsemblPlants:AT1G16080
EnsemblPlants:AT1G16080.1entrez:838178Gene3D:1.10.1040.10GeneID:838178GO:GO:0009507GO:GO:0009570GO:GO:0009941
GO:GO:0016491GO:GO:0048046Gramene:AT1G16080.1hmmpanther:PTHR34044HOGENOM:HOG000265126InterPro:IPR013328KEGG:ath:AT1G16080
ncoils:CoilOMA:DPWFESKPhylomeDB:Q9S9M7PIR:F86295Proteomes:UP000006548RefSeq:NP_563991.1STRING:3702.AT1G16080.1
TAIR:AT1G16080UniGene:At.20312UniGene:At.67074UniProt:Q9S9M7
Coordinates (TAIR10) chr1:+:5514394..5515761
Molecular Weight (calculated) 34132.00 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.11
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKASSTLFA VSCSASARFS FLRRSESLKP SVSRARFAVP MAMAAASAAT AKKLAPAVIV GGGRVGRALQ EMGNGEDLLV KRGEAVPVDF EGPILVCTRN
101: DDLDAVLEAT PQSRWKDLVF FQNGMMEPWF ESKGLGDTDQ VLAYFAVSKL GEPPVDGKTD TNPEGLTAAY GKWASEIAAR LQSGGLSCKV LDKEAFQKQM
201: LEKLIWICAF MLVGARHPGA SVGTVEKEYR DEVSRLIQEL AAAAAAEKGL TFEENMVERL CAYSRAVSHF PTAVKEFKWR NGWFYSLSEK AIAEGQPDPC
301: PLHTEWLKEL KVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)