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AT1G15980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NDH-dependent cyclic electron flow 1
Curator
Summary (TAIR10)
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
Computational
Description (TAIR10)
NDH-dependent cyclic electron flow 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 119 Blast hits to 119 proteins in 57 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0859eggNOG:ENOG410IGYFEMBL:AC010924EMBL:AY057703EMBL:AY084966EMBL:AY124875EMBL:CP002684
EMBL:KJ139005EnsemblPlants:AT1G15980EnsemblPlants:AT1G15980.1entrez:838168GeneID:838168Genevisible:Q9S9N6GO:GO:0006810
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009773GO:GO:0010598Gramene:AT1G15980.1hmmpanther:PTHR37698
hmmpanther:PTHR37698:SF1HOGENOM:HOG000030133KEGG:ath:AT1G15980OMA:LPLEHWAPaxDb:Q9S9N6Pfam:Q9S9N6PhylomeDB:Q9S9N6
PIR:D86294PRIDE:Q9S9N6PRO:PR:Q9S9N6ProteinModelPortal:Q9S9N6Proteomes:UP000006548RefSeq:NP_563986.1STRING:3702.AT1G15980.1
SUPFAM:SSF53756TAIR:AT1G15980tair10-symbols:NDF1tair10-symbols:NDH48TCDB:3.D.1.8.1UniGene:At.26234UniProt:Q9S9N6
Coordinates (TAIR10) chr1:+:5489314..5491199
Molecular Weight (calculated) 51025.10 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.24
Length 461 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSLPLLPK PISPFFKTPP FSTSKPLVFL NFQTRLTSRS SDVSVNLKKK NNPWLDPFDS GEDPDNEYGS LFADGKQDED PRPPDNPDNP YGFLKFPKGY
101: TVELASLPLK IRGDVRRCCC VISGGVYENL LFFPTIQLIK DRYPGVQVDI LTTERGKQTY ELNKNVRWAN VYDPDDHWPE PAEYTDMIGL LKGRYYDMVL
201: STKLAGLGHA AFLFMTTARD RVSYIYPNVN SAGAGLMLSE TFTAENTNLS ELGYSMYTQM EDWLGRPFRS VPRTPLLPLR VSISRKVKEV VAAKYRNAGA
301: VTGKFIVIHG IESDSKASMQ SKGDADSLLS LEKWAKIIKG VRGFKPVFVI PHEKERENVE DFVGDDTSIV FITTPGQLAA LINDSAGVIA TNTAAIQLAN
401: ARDKPCIGLF SSEEKGKLFV PYAEEKSNCV IIASKTGKLA DIDIGTVKNA MQVFEGSLAL V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)