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AT1G15960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.903
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NRAMP metal ion transporter 6
Curator
Summary (TAIR10)
member of Nramp2 family
Computational
Description (TAIR10)
NRAMP metal ion transporter 6 (NRAMP6); FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 1 (TAIR:AT1G80830.1); Has 5518 Blast hits to 5467 proteins in 1679 species: Archae - 118; Bacteria - 4110; Metazoa - 356; Fungi - 271; Plants - 336; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1914eggNOG:KOG1291EMBL:AC010924EMBL:AJ291831EMBL:AY263397EMBL:CP002684EnsemblPlants:AT1G15960
EnsemblPlants:AT1G15960.1entrez:838166GeneID:838166Genevisible:Q9S9N8GO:GO:0012505GO:GO:0015086GO:GO:0016021
GO:GO:0055072GO:GO:0070574HAMAP:MF_00221hmmpanther:PTHR11706hmmpanther:PTHR11706:SF33HOGENOM:HOG000152203InParanoid:Q9S9N8
InterPro:IPR001046KEGG:ath:AT1G15960OMA:PTKVGIIPANTHER:PTHR11706PaxDb:Q9S9N8Pfam:PF01566Pfam:Q9S9N8
PhylomeDB:Q9S9N8PIR:B86294PRINTS:PR00447PRO:PR:Q9S9N8ProteinModelPortal:Q9S9N8Proteomes:UP000006548RefSeq:NP_173048.3
SMR:Q9S9N8STRING:3702.AT1G15960.1TAIR:AT1G15960tair10-symbols:ATNRAMP6tair10-symbols:NRAMP6TIGRfam:TIGR01197TIGRFAMs:TIGR01197
TMHMM:TMhelixUniGene:At.23016UniGene:At.72454UniProt:Q9S9N8
Coordinates (TAIR10) chr1:-:5482202..5485066
Molecular Weight (calculated) 57248.70 Da
IEP (calculated) 8.00
GRAVY (calculated) 0.60
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAETASGSN RSISNSPLIE NSDSNQILVP EKKSWKNFFS YLGPGFLVSI AYIDPGNFET DLQSGAQYKY ELLWIILVAS CAALVIQSLA ANLGVVTGKH
101: LAEHCRAEYS KVPNFMLWVV AEIAVVACDI PEVIGTAFAL NMLFNIPVWI GVLLTGLSTL ILLALQQYGI RKLEFLIAFL VFTIALCFFV ELHYSKPDPK
201: EVLYGLFVPQ LKGNGATGLA ISLLGAMVMP HNLFLHSALV LSRKIPRSVT GIKEACRYYL IESGLALMVA FLINVSVISV SGAVCNASDL SPEDRASCQD
301: LDLNKASFLL RNVVGKWSSK LFAIALLASG QSSTITGTYA GQYVMQGFLD LRLEPWLRNF LTRCLAIIPS LIVALIGGSA GAGKLIIIAS MILSFELPFA
401: LVPLLKFTSS KTKMGSHANS LVISSVTWII GGLIMGINIY YLVSSFIKLL LHSHMNLVAI VFLGVLGFSG IATYLAAISY LVLRKNRESS STHFLDFSNS
501: QTEETLPRED IANMQLPNRV AVIGDLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)