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AT1G15940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 113244 Blast hits to 64070 proteins in 2877 species: Archae - 468; Bacteria - 17745; Metazoa - 45816; Fungi - 13599; Plants - 5330; Viruses - 622; Other Eukaryotes - 29664 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQW7eggNOG:KOG1525EMBL:AC010924EMBL:CP002684EnsemblPlants:AT1G15940EnsemblPlants:AT1G15940.1entrez:838164
Gene3D:1.25.10.10GeneID:838164GO:GO:0005829GO:GO:0009506Gramene:AT1G15940.1hmmpanther:PTHR12663hmmpanther:PTHR12663:SF3
HOGENOM:HOG000015164InterPro:IPR011989InterPro:IPR016024KEGG:ath:AT1G15940ncoils:CoilOMA:METIMITPhylomeDB:Q9S9P0
PIR:H86293Proteomes:UP000006548Reactome:R-ATH-2468052Reactome:R-ATH-2470946RefSeq:NP_173046.2STRING:3702.AT1G15940.1SUPFAM:SSF48371
SUPFAM:SSF63748TAIR:AT1G15940UniGene:At.28119UniProt:Q9S9P0
Coordinates (TAIR10) chr1:+:5473672..5478050
Molecular Weight (calculated) 109600.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.97
Length 990 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPLVEATEF SKEQALTDAA ENLLKPHFST DATLSLLEVM ESLLATVEQD LSSSVQKALH PPMRALVSAD LLRNPDSDVR VSVVSCLTEI MRITAPEAPY
101: NDEQMKDIFQ VTIEAFEKLA DASSRSYRKA EVILETVAKV RSSLVMLDLE CDDLVLEMFQ RFLKIIRPDH PQLVLVSMET IMITVIDESE EVPMDLLEIL
201: LTTVKKDSQD VSPAALTLVE KVLSSCTCKL QPCIMEALKS SGTSLDMYSP VVSSICQSEF ATTQAHNDVK PKDNEADEKI SEGQVVPSDS LEDKLNLGLS
301: RKGTRSKRSA RGGTRRANGD EKVITANEGL SESTDAETAS GSTRKRGWKP KSLMNPEEGY SFKTSSSKKV QEKELGDSSL GKVAAKKVPL PSKVGQTNQS
401: VVISLSSSGR ARTGSRKRSR TKMEETDHDV SSVATQPAKK QTVKKTNPAK EDLTKSNVKK HEDGIKTGKS SKKEKADNGL AKTSAKKPLA ETMMVKPSGK
501: KLVHSDAKKK NSEGASMDTP IPQSSKSKKK DSRATTPATK KSEQAPKSHP KMKRIAGEEV ESNTNELGEE LVGKRVNVWW PLDKKFYEGV IKSYCRVKKM
601: HQVTYSDGDV EELNLKKERF KIIEDKSSAS EDKEDDLLES TPLSAFIQRE KSKKRKIVSK NVEPSSSPEV RSSMQTMKKK DSVTDSIKQT KRTKGALKAV
701: SNEPESTTGK NLKSLKKLNG EPDKTRGRTG KKQKVTQAMH RKIEKDCDEQ EDLETKDEED SLKLGKESDA EPDRMEDHQE LPENHNVETK TDGEEQEAAK
801: EPTAESKTNG EEPNAEPETD GKEHKSLKEP NAEPKSDGEE QEAAKEPNAE LKTDGENQEA AKELTAERKT DEEEHKVADE VEQKSQKETN VEPEAEGEEQ
901: KSVEEPNAEP KTKVEEKESA KEQTADTKLI EKEDMSKTKG EEIDKETYSS IPETGKVGNE AEEDDQRVIK ELEEESDKAE VSTTVLEVDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)