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AT1G15920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.589
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G32070.1); Has 915 Blast hits to 901 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 254; Fungi - 151; Plants - 388; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioGrid:23402DNASU:838162EC:3.1.13.4eggNOG:COG5228
eggNOG:KOG0304EMBL:AC010924EMBL:AK317215EMBL:AY080754
EMBL:AY114040EMBL:CP002684EnsemblPlants:AT1G15920EnsemblPlants:AT1G15920.1
EnsemblPlants:AT1G15920.2entrez:838162Gene3D:3.30.420.10GeneID:838162
Genevisible:Q9S9P2GO:GO:0003723GO:GO:0004535GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0046872
Gramene:AT1G15920.1Gramene:AT1G15920.2hmmpanther:PTHR10797HOGENOM:HOG000173077
InParanoid:Q9S9P2IntAct:Q9S9P2InterPro:IPR006941InterPro:IPR012337
KEGG:ath:AT1G15920KO:K12581OMA:TNDELPIPaxDb:Q9S9P2
Pfam:PF04857Pfam:Q9S9P2PhylomeDB:Q9S9P2PIR:F86293
PRIDE:Q9S9P2PRO:PR:Q9S9P2ProteinModelPortal:Q9S9P2Proteomes:UP000006548
RefSeq:NP_173044.1RefSeq:NP_973838.1SMR:Q9S9P2STRING:3702.AT1G15920.1
SUPFAM:SSF53098TAIR:AT1G15920UniGene:At.41908UniProt:Q9S9P2
Coordinates (TAIR10) chr1:+:5469962..5470822
Molecular Weight (calculated) 32637.10 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.17
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)