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AT1G15830.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.957
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 165982 Blast hits to 57214 proteins in 2459 species: Archae - 263; Bacteria - 44622; Metazoa - 55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other Eukaryotes - 34550 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G15830EnsemblPlants:AT1G15830.1entrez:838153GeneID:838153Gramene:AT1G15830.1HOGENOM:HOG000131777
InParanoid:Q3EDB7KEGG:ath:AT1G15830OMA:TQVMQGCPaxDb:Q3EDB7PRIDE:Q3EDB7ProteinModelPortal:Q3EDB7Proteomes:UP000006548
RefSeq:NP_173035.1TAIR:AT1G15830UniGene:At.41914UniProt:Q3EDB7
Coordinates (TAIR10) chr1:+:5448726..5450177
Molecular Weight (calculated) 43302.90 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.47
Length 483 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGGVNVDWS IGGSMVTSGG GGCPMTISGG RLFTGGGDPV IITGGRLSTG AAGGVNVDRS KGGGRRKTGD GGGDPVVISG GENHASGGMG GTSATRGGGG
101: EPVIPGAPPP NRGGGETVIP GAPPPIRGGG GEPAIPGAPP PKRGGGGEPV IPGAPPPKRG GGGEPVIPGA PPPKRGGGGE PVIPGAPPPK RGGGGEPVIP
201: GAPPPKRGGG GEPVIPGAPP PKRGGGGEPV IPGAPLPKRG GGGESVVPGA PPPKRGGGVI VNGGCETVPP GRGGGGDKTN GRGGEGREED NGGGRGAEGG
301: GRGSTGEGVT DGGGRTGNKG GNGGSIKIGV GTNGITGGTG GGEAGAGMQV MQGWGGGGSG AATQVMQGCG GGDAGAITQV MQGWGGGGAG AVTQVMQGCG
401: GGGGGGDGGG GQGTGIGGGG GGEQGTGVGG GGDTCTQVTH GGGGAPLTMI GGGGGEQGVT GSDGGGGRGR GGGKVAGGGK KGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)