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AT1G15760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.918
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Sterile alpha motif (SAM) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G80520.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:838145eggNOG:ENOG410IXM1eggNOG:ENOG410Y1R0EMBL:AC034256EMBL:BT030083EMBL:CP002684EnsemblPlants:AT1G15760
EnsemblPlants:AT1G15760.1entrez:838145Gene3D:1.10.150.50GeneID:838145Gramene:AT1G15760.1hmmpanther:PTHR33915HOGENOM:HOG000241077
IntAct:Q9LMQ8InterPro:IPR001660InterPro:IPR013761KEGG:ath:AT1G15760OMA:KMALLRHPfam:PF07647PhylomeDB:Q9LMQ8
PIR:H86291Proteomes:UP000006548RefSeq:NP_173028.1SMR:Q9LMQ8STRING:3702.AT1G15760.1SUPFAM:SSF47769TAIR:AT1G15760
UniGene:At.51624UniProt:Q9LMQ8
Coordinates (TAIR10) chr1:+:5425714..5426322
Molecular Weight (calculated) 23595.10 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.69
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDWWFSWLS RTNLEPSLIH EYGLSFSQNE LEHEDISYFD HEFLQSMGIS IAKHRLEILK LARRDRKNSP PLTSRSISRV VTAIKKTRKC LSDHVRAWIR
101: REEESASSRA LVLVPKKTSN GIGKWRGGFL KRNKRSVMPS NGNGGLEKQE RLLLTNGTPC RIDSFSSPMV FDYSFKDEKL YAQDTYFEDI KWDSMFQNLK
201: PT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)