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AT1G15740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IT1YeggNOG:ENOG410ZKNAEMBL:AY142631EMBL:CP002684EnsemblPlants:AT1G15740EnsemblPlants:AT1G15740.1entrez:838143
Gene3D:3.80.10.10GeneID:838143Gramene:AT1G15740.1hmmpanther:PTHR24006hmmpanther:PTHR24006:SF451HOGENOM:HOG000239257InterPro:IPR001611
InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT1G15740OMA:CKLSANDPfam:PF13516Pfam:PF13855PhylomeDB:Q8H1Q4
Proteomes:UP000006548RefSeq:NP_563980.2SMART:SM00367SMR:Q8H1Q4STRING:3702.AT1G15740.1SUPFAM:SSF52047TAIR:AT1G15740
UniGene:At.48194UniGene:At.69991UniProt:Q8H1Q4
Coordinates (TAIR10) chr1:+:5411509..5414544
Molecular Weight (calculated) 63892.10 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.08
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MILDYIIMGG ACSRKRDQQV EDILNRGVSG KYSKSSSSKW LATSLSRSGS DVKRKNGECP SLMELCVRKI QEDIDRYTKF SDLPRDISQQ IFDELVYSQR
101: LTLKSLEAFR DCAIQDLYLG EYPGVNDDWM DVISSQSTSL LSVDFSGSDI TDSGLVSLKG CTNLESLNFN FCDQISNRGL VHLSGLSNLT SLSFRRNAAI
201: TAQGMRALSN LVNLKKLDLE KCPGIDGGLV HLRALTKLES LNIKWCNCIT DADMEPLSVL TNLRSLQICC SKITDIGISY LKGLNKLNLL NLEGCRHVTA
301: ACLDTLTALA GLMYLNLNRC NFSDSGCEKF SDLINLKILN LGMNNITNSC LVHLKGLTKL ESLNLDSCRI GDEGLVHLSG MLELKSLELS DTEVGSNGLR
401: HLSGLSNLES INLSFTVVTD SGLRKLSGLT SLRTLNLDAR HVTDAGLSAL TSLTGLTHLD LFGARITDSG TNHLRNLKKL QSLEICGGGL TDTGVKNIKD
501: LSSLTLLNLS QNSNLTDKTL ELISGLTGLV SLNVSNSRVS SSGLRHLKPL KNLRSLTLES CKLSANDIRK LQATDLPNLV NFRPE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)