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AT1G15670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.570
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G80440.1); Has 1241 Blast hits to 1194 proteins in 125 species: Archae - 6; Bacteria - 99; Metazoa - 399; Fungi - 6; Plants - 685; Viruses - 3; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
BioGrid:23376eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AC034256
EMBL:AF332423EMBL:AK228088EMBL:AY049307EMBL:AY057738
EMBL:CP002684EnsemblPlants:AT1G15670EnsemblPlants:AT1G15670.1entrez:838136
Gene3D:2.130.10.80GeneID:838136Genevisible:Q9LMR5GO:GO:0005829
GO:GO:0080037GO:GO:2000762Gramene:AT1G15670.1hmmpanther:PTHR24413
hmmpanther:PTHR24413:SF93HOGENOM:HOG000239167InParanoid:Q9LMR5IntAct:Q9LMR5
InterPro:IPR006652InterPro:IPR015916iPTMnet:Q9LMR5KEGG:ath:AT1G15670
OMA:RDECTAIPaxDb:Q9LMR5Pfam:PF13964Pfam:Q9LMR5
PhylomeDB:Q9LMR5PIR:G86290PRIDE:Q9LMR5PRO:PR:Q9LMR5
ProteinModelPortal:Q9LMR5Proteomes:UP000006548RefSeq:NP_563979.1SMART:SM00612
STRING:3702.AT1G15670.1SUPFAM:0052715TAIR:AT1G15670UniGene:At.23684
UniGene:At.74091UniProt:Q9LMR5
Coordinates (TAIR10) chr1:+:5390119..5391198
Molecular Weight (calculated) 40180.80 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.19
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MELIPDLPET VAYECLLRSS YKQFPLMASV CKLWQREISL SDFFRHRKAS GHSQELVVLS QARVDPVKEL VSGNKTIPTP VYRISVLELG TGLRSELPPV
101: PGHSNGLPLF CRLVSVGSDL VVLCGLDPVT WRTSDSVFVF SFLTSTWRVG KSMPGGPRSF FACASDSQRN VFVAGGHDED KNAMMSALVY DVAEDRWAFL
201: PDMGRERDEC TAIFHAGKFH VIGGYSTEEQ GQFSKTAESF DVTTWRWSPQ GEEFLSSEMT MWPPICAAGE NGDLYACCRR DLMMMKDDTW YKVGNLPADV
301: CNVSYVAIRR SGNLVVIGSA RYGEPSVGYN WDMSNSRWLK LETHDKYEGH VQAGCFLEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)